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    Proline-rich extensin-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824623, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Proline-rich extensin-like family protein
    Primary source
    TAIR:AT3G54580
    Locus tag
    AT3G54580
    See related
    Araport:AT3G54580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (20200573..20203919, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene histone H2A 11 Neighboring gene Plant calmodulin-binding protein-like protein Neighboring gene hydroxyproline-rich glycoprotein Neighboring gene Class I glutamine amidotransferase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115315.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of cell wall IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in plant-type cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Proline-rich extensin-like family protein
    NP_191021.2
    • Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, root, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT3G28550.1); Has 478331 Blast hits to 51256 proteins in 1906 species: Archae - 1077; Bacteria - 77248; Metazoa - 176231; Fungi - 77872; Plants - 71303; Viruses - 12471; Other Eukaryotes - 62129 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20200573..20203919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115315.3 → NP_191021.2  Proline-rich extensin-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JCZ1
    Nucleotide Protein
    Heading Accession and Version

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