U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Duplicated homeodomain-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830464, updated on 18-Sep-2024

    Summary

    Official Full Name
    Duplicated homeodomain-like superfamily protein
    Primary source
    TAIR:AT5G05790
    Locus tag
    AT5G05790
    See related
    Araport:AT5G05790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MJJ3.20; MJJ3_20
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (1740523..1742186, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene WUSCHEL related homeobox 7 Neighboring gene RP non-ATPase subunit 8A Neighboring gene tRNA-Arg Neighboring gene Myb/SANT-like DNA-binding domain protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001342835.1
    NM_120661.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus  

    General protein information

    Preferred Names
    Duplicated homeodomain-like superfamily protein
    NP_196198.1
    • Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT3G11280.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1740523..1742186 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120661.3NP_196198.1  Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196198.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y228, Q9FFJ9
      Conserved Domains (3) summary
      smart00717
      Location:130179
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:3076
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      cl21498
      Location:128180
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    2. NM_001342835.1NP_001332439.1  Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y228, Q9FFJ9
    Loading
    Loading
    External link. Please review our privacy policy.