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    2-aminoethanethiol dioxygenase, putative (DUF1637) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831364, updated on 18-Sep-2024

    Summary

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    Official Full Name
    2-aminoethanethiol dioxygenase, putative (DUF1637)
    Primary source
    TAIR:AT5G15120
    Locus tag
    AT5G15120
    See related
    Araport:AT5G15120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2G14.1; PCO1; plant cysteine oxidase 1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (4898641..4900734)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Auxin efflux carrier family protein Neighboring gene Pectate lyase family protein Neighboring gene WRKY DNA-binding protein 72 Neighboring gene Galactose mutarotase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway. Weits DA, et al. Nat Commun, 2014 Mar 6. PMID 24599061, Free PMC Article
    2. Plant cysteine oxidases are dioxygenases that directly enable arginyl transferase-catalysed arginylation of N-end rule targets. White MD, et al. Nat Commun, 2017 Mar 23. PMID 28332493, Free PMC Article
    3. Molecular basis for cysteine oxidation by plant cysteine oxidases from Arabidopsis thaliana. Chen Z, et al. J Struct Biol, 2021 Mar. PMID 33207269
    4. Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses. Mustroph A, et al. Plant Physiol, 2010 Mar. PMID 20097791, Free PMC Article
    5. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_121516.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within anaerobic respiration IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within anaerobic respiration IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    acts_upstream_of_or_within detection of hypoxia IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within peptidyl-cysteine oxidation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to hypoxia IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    2-aminoethanethiol dioxygenase, putative (DUF1637)
    NP_197016.1
    • Protein of unknown function (DUF1637); FUNCTIONS IN: cysteamine dioxygenase activity; INVOLVED IN: anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1637) (TAIR:AT5G39890.1); Has 363 Blast hits to 363 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4898641..4900734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121516.4 → NP_197016.1  2-aminoethanethiol dioxygenase, putative (DUF1637) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197016.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LXG9
      UniProtKB/TrEMBL
      A0A178UQY6
      Conserved Domains (1) summary
      pfam07847
      Location:89 → 291
      PCO_ADO
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LXG9.1

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