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    Transport protein particle (TRAPP) component [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835565, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transport protein particle (TRAPP) component
    Primary source
    TAIR:AT5G54750
    Locus tag
    AT5G54750
    See related
    Araport:AT5G54750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBG8.1; MBG8_1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (22241478..22243721)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene seed storage albumin 5 Neighboring gene Trypsin family protein Neighboring gene Translation initiation factor SUI1 family protein Neighboring gene thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Crystal structure of bet3 reveals a novel mechanism for Golgi localization of tethering factor TRAPP. Kim YG, et al. Nat Struct Mol Biol, 2005 Jan. PMID 15608655
    2. Plant cytokinesis is orchestrated by the sequential action of the TRAPPII and exocyst tethering complexes. Rybak K, et al. Dev Cell, 2014 Jun 9. PMID 24882377
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203610.1
    NM_124856.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in Golgi vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of TRAPP complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in intracellular anatomical structure ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Transport protein particle (TRAPP) component
    NP_001190539.1
    • Transport protein particle (TRAPP) component; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194), TRAPP I complex, Bet3 (InterPro:IPR016721).
    NP_200286.1
    • Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194), TRAPP I complex, Bet3 (InterPro:IPR016721); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22241478..22243721
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124856.4 → NP_200286.1  Transport protein particle (TRAPP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200286.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUA0, Q9FFV2
      Conserved Domains (1) summary
      cd14942
      Location:20 → 174
      TRAPPC3_bet3; Bet3-TRAPPC3 subunit of the TRAPP complex

    2. NM_001203610.1 → NP_001190539.1  Transport protein particle (TRAPP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190539.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K1U5
      Conserved Domains (1) summary
      cd14942
      Location:20 → 187
      TRAPPC3_bet3; Bet3-TRAPPC3 subunit of the TRAPP complex
    Nucleotide Protein
    Heading Accession and Version

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