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    COPT3 copper transporter 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836021, updated on 18-Sep-2024

    Summary

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    Official Symbol
    COPT3
    Official Full Name
    copper transporter 3
    Primary source
    TAIR:AT5G59040
    Locus tag
    AT5G59040
    See related
    Araport:AT5G59040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    copper transporter 3; K18B18.3; K18B18_3
    Summary
    encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast
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    Genomic context

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    See COPT3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (23836625..23837350)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hepatocyte growth factor activator, putative (DUF3527) Neighboring gene copper transporter 1 Neighboring gene G patch domain protein Neighboring gene tRNA-Asp

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deregulated copper transport affects Arabidopsis development especially in the absence of environmental cycles. Andrés-Colás N, et al. Plant Physiol, 2010 May. PMID 20335405, Free PMC Article
    2. Identification of a copper transporter family in Arabidopsis thaliana. Sancenón V, et al. Plant Mol Biol, 2003 Mar. PMID 12650623
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. overexpressing transgenic plants exhibit increased endogenous copper levels and are sensitive to the copper in the growth medium
      Title: Deregulated copper transport affects Arabidopsis development especially in the absence of environmental cycles.
    Submit: New GeneRIF Correction

    General gene information

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    NM_125294.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables copper ion transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables high-affinity copper ion transmembrane transporter activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in copper ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within copper ion transmembrane transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    copper transporter 3
    NP_200712.1
    • copper transporter 3 (COPT3); FUNCTIONS IN: copper ion transmembrane transporter activity, high affinity copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport; LOCATED IN: integral to membrane; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: Ctr copper transporter family (TAIR:AT2G26975.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23836625..23837350
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125294.3 → NP_200712.1  copper transporter 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200712.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LB92, Q8SAA6, Q9FGU8
      UniProtKB/TrEMBL
      A0A5S9YHQ4, A0A654GCY0
      Conserved Domains (1) summary
      pfam04145
      Location:30 → 131
      Ctr; Ctr copper transporter family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FGU8.1

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