U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AKRP ankyrin repeat protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836737, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    AKRP
    Official Full Name
    ankyrin repeat protein
    Primary source
    TAIR:AT5G66055
    Locus tag
    AT5G66055
    See related
    Araport:AT5G66055
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ankyrin repeat protein; EMB16; EMB2036; EMBRYO DEFECTIVE 16; EMBRYO DEFECTIVE 2036
    Summary
    A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AKRP in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (26417156..26419363, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene Protein phosphatase 2C family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. AKRP and EMB506 are two ankyrin repeat proteins essential for plastid differentiation and plant development in Arabidopsis. Garcion C, et al. Plant J, 2006 Dec. PMID 17092312
    2. Arabidopsis J-protein J20 delivers the first enzyme of the plastidial isoprenoid pathway to protein quality control. Pulido P, et al. Plant Cell, 2013 Oct. PMID 24104567, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_126003.3
    NM_203271.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		  
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ankyrin repeat protein
    NP_569027.2
    • ankyrin repeat protein (AKRP); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G40160.1); Has 83523 Blast hits to 28077 proteins in 1268 species: Archae - 145; Bacteria - 7202; Metazoa - 43238; Fungi - 6726; Plants - 3393; Viruses - 1185; Other Eukaryotes - 21634 (source: NCBI BLink).
    NP_975000.1
    • ankyrin repeat protein (AKRP); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G40160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26417156..26419363 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126003.3 → NP_569027.2  ankyrin repeat protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_569027.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q05753, Q3E852, Q8GYN6, Q940Y0
      UniProtKB/TrEMBL
      A0A5S9YHI4, A0A654GEL8, B9DF91
      Conserved Domains (3) summary
      PHA02876
      Location:190 → 412
      PHA02876; ankyrin repeat protein; Provisional
      sd00045
      Location:293 → 323
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:297 → 389
      Ank_2; Ankyrin repeats (3 copies)

    2. NM_203271.2 → NP_975000.1  ankyrin repeat protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_975000.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q05753
      Conserved Domains (3) summary
      cd00204
      Location:263 → 359
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:264 → 356
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:261 → 290
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q05753.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools