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    cyst cysts [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 35237, updated on 9-Dec-2024

    Summary

    Official Symbol
    cystprovided by FlyBase
    Official Full Name
    cystsprovided by FlyBase
    Primary source
    FLYBASE:FBgn0032796
    Locus tag
    Dmel_CG10188
    See related
    AllianceGenome:FB:FBgn0032796
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG10188; Cyst; Dmel\CG10188; Dp114/Cysts; Dp114RhoGEF
    Summary
    Enables guanyl-nucleotide exchange factor activity. Involved in mitotic cytokinesis, division site positioning. Is active in cleavage furrow rim. Is expressed in adult head; leg; and spermatozoon. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with midbrain and hindbrain malformations and retinitis pigmentosa. Orthologous to several human genes including ARHGEF18 (Rho/Rac guanine nucleotide exchange factor 18) and ARHGEF2 (Rho/Rac guanine nucleotide exchange factor 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See cyst in Genome Data Viewer
    Location:
    37E4-37E5; 2-54 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (19502335..19508764, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (19502335..19508764, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Cytosolic thiouridylase subunit 2 Neighboring gene second mitotic wave missing Neighboring gene Topoisomerase 3alpha Neighboring gene Hig-anchoring scaffold protein Neighboring gene long non-coding RNA:CR43363

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    mobile_element

    • Loc: c19507273-19506668 mobile_element_type = transposon:Cr1a{}412

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables guanyl-nucleotide exchange factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in mitotic cytokinesis, division site positioning IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in positive regulation of Rho protein signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of Rho protein signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cleavage furrow rim IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    cysts
    Names
    CG10188-PA
    CG10188-PB
    CG10188-PC
    cyst-PA
    cyst-PB
    cyst-PC

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      19502335..19508764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_136133.5NP_609977.1  cysts, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609977.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VIV0
      Related
      FBpp0080820
      Conserved Domains (3) summary
      cd15789
      Location:671774
      PH_ARHGEF2_18_like; rho guanine nucleotide exchange factor
      pfam00169
      Location:681774
      PH; PH domain
      pfam00621
      Location:447627
      RhoGEF; RhoGEF domain
    2. NM_001273659.2NP_001260588.1  cysts, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260588.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PBE1
      Conserved Domains (3) summary
      cd15789
      Location:671774
      PH_ARHGEF2_18_like; rho guanine nucleotide exchange factor
      pfam00169
      Location:681774
      PH; PH domain
      pfam00621
      Location:447627
      RhoGEF; RhoGEF domain
    3. NM_165305.5NP_724203.2  cysts, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_724203.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VIV0
      Related
      FBpp0080821
      Conserved Domains (3) summary
      cd15789
      Location:671774
      PH_ARHGEF2_18_like; rho guanine nucleotide exchange factor
      pfam00169
      Location:681774
      PH; PH domain
      pfam00621
      Location:447627
      RhoGEF; RhoGEF domain