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    Crg-1 Circadianly Regulated Gene [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43900, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Crg-1provided by FlyBase
    Official Full Name
    Circadianly Regulated Geneprovided by FlyBase
    Primary source
    FLYBASE:FBgn0021738
    Locus tag
    Dmel_CG32788
    See related
    AllianceGenome:FB:FBgn0021738
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG32788; crg1; Crg1; Dmel\CG32788; FoxT
    Summary
    Predicted to enable DNA-binding transcription factor activity and sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is expressed in embryonic brain and larval ventral nerve cord. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Crg-1 in Genome Data Viewer
    Location:
    3F1-3F2; 1-5 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (3793223..3797339)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (3687256..3691372)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Tousled-like kinase Neighboring gene mir-4962 stem loop Neighboring gene long non-coding RNA:CR44117 Neighboring gene Hsc/Hsp70-interacting protein related Neighboring gene pseudo Neighboring gene pseudo Neighboring gene Hsc/Hsp70-interacting protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new gene encoding a putative transcription factor regulated by the Drosophila circadian clock. Rouyer F, et al. EMBO J, 1997 Jul 1. PMID 9233804, Free PMC Article
    2. Post-transcriptional regulation contributes to Drosophila clock gene mRNA cycling. So WV, et al. EMBO J, 1997 Dec 1. PMID 9384591, Free PMC Article
    3. How cells tell time. Green CB. Trends Cell Biol, 1998 Jun. PMID 9695846
    4. Duplicate gene evolution toward multiple fates at the Drosophila melanogaster HIP/HIP-Replacement locus. Hogan CC, et al. J Mol Evol, 2009 Apr. PMID 19333534
    5. Circadian rhythms: eyes of the clock. Van Gelder RN. Curr Biol, 1998 Nov 5. PMID 9811593

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    mobile_element

    • Loc: 3794814-3794952 mobile_element_type = transposon:INE-1{}1940

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    circadianly regulated gene
    Names
    CG32788-PB
    Crg-1-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      3793223..3797339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_166990.4 → NP_726887.1  circadianly regulated gene [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_726887.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IRT6, Q9TW47
      Related
      FBpp0070574
      Conserved Domains (1) summary
      cl00061
      Location:17 → 46
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8IRT6 Q8IRT6
    Q9TW47 Q9TW47

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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