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    CG17839 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39616, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG17839provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0036454
    Locus tag
    Dmel_CG17839
    See related
    AllianceGenome:FB:FBgn0036454
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    17839; CT39634; Dmel\CG17839
    Summary
    Located in nucleus. Is expressed in adult brain cell body rind; adult head; and spermatozoon. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG17839 in Genome Data Viewer
    Location:
    70F7-71A1; 3-42 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (14805136..14882224)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (14798236..14875324)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene NHP2 Neighboring gene giant nuclei Neighboring gene long non-coding RNA:CR44702 Neighboring gene long non-coding RNA:CR45398

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cell-Surface Proteomic Profiling in the Fly Brain Uncovers Wiring Regulators. Li J, et al. Cell, 2020 Jan 23. PMID 31955847, Free PMC Article
    2. Deconstruction of the beaten Path-Sidestep interaction network provides insights into neuromuscular system development. Li H, et al. Elife, 2017 Aug 15. PMID 28829740, Free PMC Article
    3. Inherent constraints on a polyfunctional tissue lead to a reproduction-immunity tradeoff. Gupta V, et al. BMC Biol, 2022 Jun 2. PMID 35655304, Free PMC Article
    4. BrainTrap: a database of 3D protein expression patterns in the Drosophila brain. Knowles-Barley S, et al. Database (Oxford), 2010 Jul 6. PMID 20624714, Free PMC Article
    5. Genetic Basis of Natural Variation in Spontaneous Grooming in Drosophila melanogaster. Yanagawa A, et al. G3 (Bethesda), 2020 Sep 2. PMID 32727922, Free PMC Article

    See all (43) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    mobile_element

    • Loc: 14825181-14832850 mobile_element_type = transposon:Stalker2{}1001

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG17839-PB
    CG17839-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      14805136..14882224
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_206363.4 → NP_996085.2  uncharacterized protein Dmel_CG17839, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_996085.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7KUK9
      Conserved Domains (5) summary
      smart00410
      Location:1126 → 1216
      IG_like; Immunoglobulin like
      cd00063
      Location:286 → 396
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00047
      Location:33 → 116
      ig; Immunoglobulin domain
      pfam01682
      Location:185 → 278
      DB; DB module
      cl11960
      Location:1134 → 1216
      Ig; Immunoglobulin domain

    2. NM_001043141.3 → NP_001036606.1  uncharacterized protein Dmel_CG17839, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001036606.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0E8E6, Q86NP9
      Conserved Domains (4) summary
      smart00410
      Location:35 → 129
      IG_like; Immunoglobulin like
      cd00063
      Location:286 → 396
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam01682
      Location:185 → 278
      DB; DB module
      cl11960
      Location:33 → 116
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0E8E6 Q0E8E6
    Q7KUK9 Q7KUK9

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