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    BAZ1B bromodomain adjacent to zinc finger domain 1B [ Bos taurus (domestic cattle) ]

    Gene ID: 508442, updated on 30-Jan-2025

    Summary

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    Official Symbol
    BAZ1Bprovided by VGNC
    Official Full Name
    bromodomain adjacent to zinc finger domain 1Bprovided by VGNC
    Primary source
    VGNC:VGNC:26429
    See related
    BGD:BT24193; EnsemblRapid:ENSBTAG00070022960
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See BAZ1B in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (33673612..33729479)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene transducin beta like 2 Neighboring gene BAF chromatin remodeling complex subunit BCL7B Neighboring gene large ribosomal subunit protein eL42-like Neighboring gene uncharacterized LOC132343870 Neighboring gene frizzled class receptor 9 Neighboring gene FKBP prolyl isomerase family member 6 (inactive)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H2AXY142 kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of WICH complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tyrosine-protein kinase BAZ1B
    NP_001179112.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192183.3 → NP_001179112.3  tyrosine-protein kinase BAZ1B

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000025
      UniProtKB/TrEMBL
      A0A3Q1MNQ9, E1B6X6
      Related
      ENSBTAP00070031076.1, ENSBTAT00070051741.1
      Conserved Domains (7) summary
      cd05505
      Location:1343 → 1439
      Bromo_WSTF_like; Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two ...
      smart00571
      Location:604 → 668
      DDT; domain in different transcription and chromosome remodeling factors
      cd15628
      Location:1186 → 1231
      PHD_BAZ1B; PHD finger found in bromodomain adjacent to zinc finger domain protein 1B (BAZ1B)
      pfam10537
      Location:21 → 120
      WAC_Acf1_DNA_bd; ATP-utilising chromatin assembly and remodelling N-terminal
      pfam15612
      Location:727 → 767
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:898 → 1025
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
      cl25545
      Location:770 → 895
      V-ATPase_G_2; Vacuolar (H+)-ATPase G subunit

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      33673612..33729479
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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