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    ZCCHC7 zinc finger CCHC-type containing 7 [ Bos taurus (domestic cattle) ]

    Gene ID: 511821, updated on 30-Jan-2025

    Summary

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    Official Symbol
    ZCCHC7provided by VGNC
    Official Full Name
    zinc finger CCHC-type containing 7provided by VGNC
    Primary source
    VGNC:VGNC:37122
    See related
    BGD:BT24521; EnsemblRapid:ENSBTAG00070027634
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ZCCHC7 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (61209438..61489033)

    Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene maternal embryonic leucine zipper kinase Neighboring gene paired box 5 Neighboring gene large ribosomal subunit protein uL23-like Neighboring gene glyoxylate and hydroxypyruvate reductase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC137207

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in TRAMP-dependent tRNA surveillance pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear mRNA surveillance of mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear polyadenylation-dependent CUT catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear polyadenylation-dependent snRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear polyadenylation-dependent snoRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of TRAMP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCHC domain-containing protein 7
    Names
    TRAMP-like complex RNA-binding factor ZCCHC7
    zinc finger, CCHC domain containing 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046100.2 → NP_001039565.1  zinc finger CCHC domain-containing protein 7

      See identical proteins and their annotated locations for NP_001039565.1

      Status: PROVISIONAL

      Source sequence(s)
      BC112578
      UniProtKB/Swiss-Prot
      Q2KIN0
      Related
      ENSBTAP00070037660.1, ENSBTAT00070062850.1
      Conserved Domains (1) summary
      COG5082
      Location:237 → 366
      AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      61209438..61489033
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059889030.1 → XP_059745013.1  zinc finger CCHC domain-containing protein 7 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TTI9, F1MUH8

    2. XM_059889029.1 → XP_059745012.1  zinc finger CCHC domain-containing protein 7 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TTI9, F1MUH8
      Related
      ENSBTAP00070037674.1, ENSBTAT00070062868.1

    3. XM_005210152.5 → XP_005210209.1  zinc finger CCHC domain-containing protein 7 isoform X2

      UniProtKB/TrEMBL
      A0AAA9RZ51, F1MUH8
      Related
      ENSBTAP00070037684.1, ENSBTAT00070062881.1
      Conserved Domains (2) summary
      pfam05110
      Location:408 → 520
      AF-4; AF-4 proto-oncoprotein
      cl26705
      Location:238 → 367
      AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2KIN0.2 GenPept UniProtKB/Swiss-Prot:Q2KIN0

    Gene LinkOut

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