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    ARMC2 armadillo repeat containing 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 520151, updated on 27-Dec-2024

    Summary

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    Official Symbol
    ARMC2provided by VGNC
    Official Full Name
    armadillo repeat containing 2provided by VGNC
    Primary source
    VGNC:VGNC:58440
    See related
    BGD:BT13210; Ensembl:ENSBTAG00000036087
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ARMC2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (41196544..41439448, complement)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein 57 like 1 Neighboring gene sestrin 1 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene forkhead box O3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cilium organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sperm axoneme assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    armadillo repeat-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075801.2 → NP_001069269.2  armadillo repeat-containing protein 2

      See identical proteins and their annotated locations for NP_001069269.2

      Status: VALIDATED

      Source sequence(s)
      BT025446, DN514839, DN515507, DV890806
      UniProtKB/Swiss-Prot
      P0C6R2
      UniProtKB/TrEMBL
      A0AAA9S8E5
      Related
      ENSBTAP00000006360.6, ENSBTAT00000006360.6
      Conserved Domains (1) summary
      sd00043
      Location:709 → 744
      ARM; armadillo repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      41196544..41439448 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059889700.1 → XP_059745683.1  armadillo repeat-containing protein 2 isoform X1

      UniProtKB/Swiss-Prot
      P0C6R2
      UniProtKB/TrEMBL
      A0AAA9S8E5

    2. XM_059889698.1 → XP_059745681.1  armadillo repeat-containing protein 2 isoform X1

      UniProtKB/Swiss-Prot
      P0C6R2
      UniProtKB/TrEMBL
      A0AAA9S8E5

    3. XM_024996614.2 → XP_024852382.1  armadillo repeat-containing protein 2 isoform X1

      UniProtKB/Swiss-Prot
      P0C6R2
      UniProtKB/TrEMBL
      A0AAA9S8E5
      Related
      ENSBTAP00000079917.1, ENSBTAT00000088211.1
      Conserved Domains (1) summary
      sd00043
      Location:709 → 744
      ARM; armadillo repeat [structural motif]

    4. XM_024996615.2 → XP_024852383.1  armadillo repeat-containing protein 2 isoform X1

      UniProtKB/Swiss-Prot
      P0C6R2
      UniProtKB/TrEMBL
      A0AAA9S8E5
      Conserved Domains (1) summary
      sd00043
      Location:709 → 744
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0C6R2.1 GenPept UniProtKB/Swiss-Prot:P0C6R2

    Gene LinkOut

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