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    SOBP sine oculis binding protein homolog [ Bos taurus (domestic cattle) ]

    Gene ID: 537433, updated on 1-Jan-2025

    Summary

    Official Symbol
    SOBPprovided by VGNC
    Official Full Name
    sine oculis binding protein homologprovided by VGNC
    Primary source
    VGNC:VGNC:35118
    See related
    BGD:BT23463
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    JXC1
    Orthologs
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    Genomic context

    See SOBP in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (42424920..42571800, complement)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene Scm polycomb group protein like 4 Neighboring gene uncharacterized LOC104969545 Neighboring gene uncharacterized LOC132346102 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene uncharacterized LOC132346101 Neighboring gene decaprenyl diphosphate synthase subunit 2

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Expression

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    General gene information

    Markers

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in animal organ development IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in inner ear morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    sine oculis-binding protein homolog
    Names
    jackson circler protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101170.2NP_001094640.2  sine oculis-binding protein homolog

      See identical proteins and their annotated locations for NP_001094640.2

      Status: PROVISIONAL

      Source sequence(s)
      DQ503408
      UniProtKB/Swiss-Prot
      A7XYH9
      Conserved Domains (1) summary
      pfam15279
      Location:224524
      SOBP; Sine oculis-binding protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      42424920..42571800 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059889788.1XP_059745771.1  sine oculis-binding protein homolog isoform X1