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    SCML4 Scm polycomb group protein like 4 [ Bos taurus (domestic cattle) ]

    Gene ID: 535263, updated on 30-Jan-2025

    Summary

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    Official Symbol
    SCML4provided by VGNC
    Official Full Name
    Scm polycomb group protein like 4provided by VGNC
    Primary source
    VGNC:VGNC:34342
    See related
    BGD:BT24192; EnsemblRapid:ENSBTAG00070012237
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SCML4 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (42257572..42369442)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S19 pseudogene Neighboring gene osteoclastogenesis associated transmembrane protein 1 Neighboring gene SEC63 homolog, protein translocation regulator Neighboring gene uncharacterized LOC104969545 Neighboring gene uncharacterized LOC132346102 Neighboring gene sine oculis binding protein homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC152258

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sex comb on midleg-like protein 4
    Names
    sex comb on midleg like 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102184.2 → NP_001095654.1  sex comb on midleg-like protein 4

      See identical proteins and their annotated locations for NP_001095654.1

      Status: PROVISIONAL

      Source sequence(s)
      BC149641
      UniProtKB/TrEMBL
      A0AAA9S9U9, A6QQ48, F1N3K5
      Conserved Domains (2) summary
      cd09578
      Location:98 → 169
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:101 → 170
      SAM; Sterile alpha motif

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      42257572..42369442
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024996747.2 → XP_024852515.1  sex comb on midleg-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M7B2
      Conserved Domains (3) summary
      cd09578
      Location:379 → 454
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      pfam12140
      Location:134 → 244
      SLED; SLED domain
      pfam17208
      Location:40 → 99
      RBR; RNA binding Region

    2. XM_010808441.4 → XP_010806743.1  sex comb on midleg-like protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1M7B2
      Related
      ENSBTAP00070016728.1, ENSBTAT00070027719.1
      Conserved Domains (3) summary
      cd09578
      Location:340 → 415
      SAM_Scm; SAM domain of Scm proteins of Polycomb group
      smart00454
      Location:343 → 416
      SAM; Sterile alpha motif
      pfam12140
      Location:95 → 205
      DUF3588; Protein of unknown function (DUF3588)

    3. XM_059889778.1 → XP_059745761.1  sex comb on midleg-like protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M7B2

    4. XM_010808440.4 → XP_010806742.2  sex comb on midleg-like protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1M7B2, A0A3Q1MMU2
      Related
      ENSBTAP00070016737.1, ENSBTAT00070027728.1

    RNA

    1. XR_009495800.1 RNA Sequence

    2. XR_009495799.1 RNA Sequence

    3. XR_009495798.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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