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    VPS72 vacuolar protein sorting 72 homolog [ Bos taurus (domestic cattle) ]

    Gene ID: 534883, updated on 27-Dec-2024

    Summary

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    Official Symbol
    VPS72provided by VGNC
    Official Full Name
    vacuolar protein sorting 72 homologprovided by VGNC
    Primary source
    VGNC:VGNC:36831
    See related
    BGD:BT25410; Ensembl:ENSBTAG00000018074
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    TCFL1
    Orthologs
    human mouse all
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    Genomic context

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    See VPS72 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (19624886..19636725)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit ubiquitin receptor, non-ATPase 4 Neighboring gene phosphatidylinositol-4-phosphate 5-kinase type 1 alpha Neighboring gene tropomodulin 4 Neighboring gene sodium channel modifier 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC134217

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP-dependent H2AZ histone chaperone activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 72 homolog
    Names
    transcription factor-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015658.1 → NP_001015658.1  vacuolar protein sorting-associated protein 72 homolog

      See identical proteins and their annotated locations for NP_001015658.1

      Status: PROVISIONAL

      Source sequence(s)
      BT020964
      UniProtKB/Swiss-Prot
      Q2TBU7, Q5E9F6
      UniProtKB/TrEMBL
      A0AAF6Z4K2
      Related
      ENSBTAP00000076858.1, ENSBTAT00000099191.1
      Conserved Domains (3) summary
      pfam04180
      Location:22 → 78
      LTV; Low temperature viability protein
      pfam05764
      Location:6 → 216
      YL1; YL1 nuclear protein
      pfam08265
      Location:291 → 319
      YL1_C; YL1 nuclear protein C-terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      19624886..19636725
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5E9F6.1 GenPept UniProtKB/Swiss-Prot:Q5E9F6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials