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    C19h16orf86 similar to human chromosome 16 open reading frame 86 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498943, updated on 9-Dec-2024

    Summary

    Official Symbol
    C19h16orf86provided by RGD
    Official Full Name
    similar to human chromosome 16 open reading frame 86provided by RGD
    Primary source
    RGD:1561415
    See related
    EnsemblRapid:ENSRNOG00000017867 AllianceGenome:RGD:1561415
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561415
    Summary
    Orthologous to human C16orf86 (chromosome 16 open reading frame 86). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 11.9), Adrenal (RPKM 5.9) and 8 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See C19h16orf86 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (50506505..50508415)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (33596591..33598703)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (37675166..37677280)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene capping protein regulator and myosin 1 linker 2 Neighboring gene par-6 family cell polarity regulator alpha Neighboring gene ACD, shelterin complex subunit and telomerase recruitment factor Neighboring gene enkurin domain containing 1 Neighboring gene Gfo/Idh/MocA-like oxidoreductase domain containing 2 Neighboring gene small nuclear ribonucleoprotein polypeptide G, pseudogene 2 Neighboring gene uncharacterized LOC134483349

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    uncharacterized protein C16orf86 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001434590.1NP_001421519.1  uncharacterized protein C16orf86 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      A0A0H2UHP2, A0A8I5YBT7
    2. NM_001434591.1NP_001421520.1  uncharacterized protein C16orf86 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      A0A8I5YBT7

    RNA

    1. NR_197950.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      50506505..50508415
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017601342.3XP_017456831.1  uncharacterized protein C16orf86 homolog isoform X1

    2. XM_006255523.5XP_006255585.1  uncharacterized protein C16orf86 homolog isoform X2

      Related
      ENSRNOP00000024125.3, ENSRNOT00000024125.6
      Conserved Domains (1) summary
      pfam15762
      Location:1182
      DUF4691; Domain of unknown function (DUF4691)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001109129.1: Suppressed sequence

      Description
      NM_001109129.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.