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    A730020E08Rik RIKEN cDNA A730020E08 gene [ Mus musculus (house mouse) ]

    Gene ID: 100504262, updated on 17-Aug-2024

    Summary

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    Official Symbol
    A730020E08Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A730020E08 geneprovided by MGI
    Primary source
    MGI:MGI:2444999
    See related
    AllianceGenome:MGI:2444999
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in CNS E14 (RPKM 1.5), whole brain E14.5 (RPKM 1.4) and 13 other tissues See more
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    Genomic context

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    See A730020E08Rik in Genome Data Viewer
    Location:
    6 B3; 6 29.24 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (61152588..61157794, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (61175604..61180810, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_16065 Neighboring gene STARR-seq mESC enhancer starr_16066 Neighboring gene STARR-seq mESC enhancer starr_16068 Neighboring gene multimerin 1 Neighboring gene STARR-seq mESC enhancer starr_16076 Neighboring gene protein phosphatase 6, catalytic subunit pseudogene Neighboring gene STARR-seq mESC enhancer starr_16079 Neighboring gene STARR-seq mESC enhancer starr_16080 Neighboring gene coiled-coil serine rich 1 Neighboring gene STARR-seq mESC enhancer starr_16081 Neighboring gene STARR-seq mESC enhancer starr_16082 Neighboring gene STARR-seq mESC enhancer starr_16083 Neighboring gene STARR-seq mESC enhancer starr_16084 Neighboring gene STARR-seq mESC enhancer starr_16085 Neighboring gene STARR-seq mESC enhancer starr_16086 Neighboring gene STARR-seq mESC enhancer starr_16087 Neighboring gene STARR-seq mESC enhancer starr_16088 Neighboring gene STARR-seq mESC enhancer starr_16089 Neighboring gene STARR-seq mESC enhancer starr_16090 Neighboring gene STARR-seq mESC enhancer starr_16091 Neighboring gene STARR-seq mESC enhancer starr_16092 Neighboring gene STARR-seq mESC enhancer starr_16093 Neighboring gene STARR-seq mESC enhancer starr_16094 Neighboring gene STARR-seq mESC enhancer starr_16095 Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene Neighboring gene STARR-seq mESC enhancer starr_16096 Neighboring gene sprouty homolog 2 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040287.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC113320, AK043607, AK158619

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      61152588..61157794 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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