U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 [ Sus scrofa (pig) ]

    Gene ID: 100135670, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    AIMP1provided by VGNC
    Official Full Name
    aminoacyl tRNA synthetase complex interacting multifunctional protein 1provided by VGNC
    Primary source
    VGNC:VGNC:85202
    See related
    Ensembl:ENSSSCG00000024168
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    SCYE1
    Expression
    Ubiquitous expression in psoas major muscle (RPKM 68.1), longissimus dorsi muscle (RPKM 66.4) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AIMP1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (115437453..115476735, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (123840344..123893742, complement)

    Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110262178 Neighboring gene GIMAP family P-loop NTPase domain containing 1 Neighboring gene TBC1 domain containing kinase Neighboring gene nephronectin

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    aminoacyl tRNA synthase complex-interacting multifunctional protein 1
    Names
    small inducible cytokine subfamily E, member 1 (endothelial monocyte-activating)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001114283.1 → NP_001107755.1  aminoacyl tRNA synthase complex-interacting multifunctional protein 1

      See identical proteins and their annotated locations for NP_001107755.1

      Status: PROVISIONAL

      Source sequence(s)
      EU352799
      UniProtKB/TrEMBL
      A0A5K1VI30, B0FWK6, I3LFC4
      Related
      ENSSSCP00000044428.2, ENSSSCT00000065886.2
      Conserved Domains (2) summary
      cd02799
      Location:158 → 260
      tRNA_bind_EMAP-II_like; tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae ...
      pfam07989
      Location:31 → 79
      Cnn_1N; Centrosomin N-terminal motif 1

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

      Range
      115437453..115476735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021100267.1 → XP_020955926.1  aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1UV89, A0A8D1VGN8
      Conserved Domains (2) summary
      cl26127
      Location:139 → 311
      PRK12267; methionyl-tRNA synthetase; Reviewed
      cl26819
      Location:15 → 78
      tRNA_SAD; Threonyl and Alanyl tRNA synthetase second additional domain

    2. XM_021100268.1 → XP_020955927.1  aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1UV89, A0A8D1VGN8
      Related
      ENSSSCP00000022764.3, ENSSSCT00000023345.3
      Conserved Domains (2) summary
      cl26127
      Location:139 → 311
      PRK12267; methionyl-tRNA synthetase; Reviewed
      cl26819
      Location:15 → 78
      tRNA_SAD; Threonyl and Alanyl tRNA synthetase second additional domain

    3. XM_021100269.1 → XP_020955928.1  aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1UV89, A0A8D1VGN8
      Conserved Domains (2) summary
      cl26127
      Location:139 → 311
      PRK12267; methionyl-tRNA synthetase; Reviewed
      cl26819
      Location:15 → 78
      tRNA_SAD; Threonyl and Alanyl tRNA synthetase second additional domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.