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    RPL34 ribosomal protein L34 [ Sus scrofa (pig) ]

    Gene ID: 100517840, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RPL34provided by VGNC
    Official Full Name
    ribosomal protein L34provided by VGNC
    Primary source
    VGNC:VGNC:98957
    See related
    Ensembl:ENSSSCG00000009146
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 269.4), spleen (RPKM 266.4) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See RPL34 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (113467779..113472058, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (121707364..121711637, complement)

    Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene ethanolamine-phosphate phospho-lyase Neighboring gene uncharacterized LOC102161553 Neighboring gene oligosaccharyltransferase complex non-catalytic subunit Neighboring gene uncharacterized LOC100738196 Neighboring gene uncharacterized LOC110262176

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein L34

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

      Range
      113467779..113472058 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005666943.3 → XP_005667000.1  60S ribosomal protein L34

      See identical proteins and their annotated locations for XP_005667000.1

      UniProtKB/Swiss-Prot
      F2Z5B9, Q29223
      Conserved Domains (1) summary
      pfam01199
      Location:1 → 96
      Ribosomal_L34e; Ribosomal protein L34e

    2. XM_005666942.3 → XP_005666999.1  60S ribosomal protein L34

      See identical proteins and their annotated locations for XP_005666999.1

      UniProtKB/Swiss-Prot
      F2Z5B9, Q29223
      Conserved Domains (1) summary
      pfam01199
      Location:1 → 96
      Ribosomal_L34e; Ribosomal protein L34e

    3. XM_013978965.1 → XP_013834419.1  60S ribosomal protein L34

      UniProtKB/Swiss-Prot
      F2Z5B9, Q29223
      Conserved Domains (1) summary
      pfam01199
      Location:1 → 96
      Ribosomal_L34e; Ribosomal protein L34e

    4. XM_013978964.2 → XP_013834418.1  60S ribosomal protein L34

      UniProtKB/Swiss-Prot
      F2Z5B9, Q29223
      Related
      ENSSSCP00000009753.2, ENSSSCT00000010015.5
      Conserved Domains (1) summary
      pfam01199
      Location:1 → 96
      Ribosomal_L34e; Ribosomal protein L34e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q29223.3 GenPept UniProtKB/Swiss-Prot:Q29223

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