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    NUTF2 nuclear transport factor 2 [ Sus scrofa (pig) ]

    Gene ID: 100520245, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NUTF2provided by VGNC
    Official Full Name
    nuclear transport factor 2provided by VGNC
    Primary source
    VGNC:VGNC:98524
    See related
    Ensembl:ENSSSCG00000030295
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in heart (RPKM 31.4), ovary (RPKM 31.2) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See NUTF2 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (28469274..28489007)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (25643308..25663373, complement)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene translin associated factor X interacting protein 1 Neighboring gene centromere protein T Neighboring gene THAP domain containing 11 Neighboring gene enhancer of mRNA decapping 4 Neighboring gene neuritin 1 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore central transport channel IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transport factor 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      28469274..28489007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003126922.5 → XP_003126970.2  nuclear transport factor 2

      UniProtKB/TrEMBL
      A0A287A021, A0A4X1UDL5, A0A4X1UHL0, A0A8D0IEK3, A0A8D0V5A8, F1S2K3
      Related
      ENSSSCP00000037241.1, ENSSSCT00000048914.3
      Conserved Domains (1) summary
      cd00780
      Location:7 → 122
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
    Nucleotide Protein
    Heading Accession and Version

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