U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01838 long intergenic non-protein coding RNA 1838 [ Homo sapiens (human) ]

    Gene ID: 100652911, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01838provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1838provided by HGNC
    Primary source
    HGNC:HGNC:52654
    See related
    AllianceGenome:HGNC:52654
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 3.7) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC01838 in Genome Data Viewer
    Location:
    19q13.11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (34905315..34908191)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (37449871..37452747)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (35396219..35399095)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) pseudogene Neighboring gene long intergenic non-protein coding RNA 904 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:35396062-35396771 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:35400119-35400717 Neighboring gene ZNF30 antisense RNA 1 Neighboring gene zinc finger protein 30 Neighboring gene uncharacterized LOC124904699 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10510 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10511 Neighboring gene zinc finger protein 792

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146451.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC008555

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      34905315..34908191
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      37449871..37452747
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)