U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC00424 long intergenic non-protein coding RNA 424 [ Homo sapiens (human) ]

    Gene ID: 100874182, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC00424provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 424provided by HGNC
    Primary source
    HGNC:HGNC:42815
    See related
    Ensembl:ENSG00000226722 AllianceGenome:HGNC:42815
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.1) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC00424 in Genome Data Viewer
    Location:
    13q12.11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (21872796..21878160, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (21069703..21075067, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (22446935..22452299, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903132 Neighboring gene RNA, 7SL, cytoplasmic 766, pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_32608 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:22614879-22615380 Neighboring gene uncharacterized LOC105370108 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:22615381-22615880 Neighboring gene Sharpr-MPRA regulatory region 1095 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7442 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7443 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:22637869-22638369 Neighboring gene NANOG hESC enhancer GRCh37_chr13:22654882-22655433 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7444 Neighboring gene NME/NM23 nucleoside diphosphate kinase 1 pseudogene 1 Neighboring gene MT-ND3 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047040.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX092749
      Related
      ENST00000624644.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      21872796..21878160 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      21069703..21075067 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)