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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_009164.1 RefSeqGene
- Range
-
5026..93863
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001008744.2 → NP_001008744.1 tyrosyl-DNA phosphodiesterase 1 isoform a
See identical proteins and their annotated locations for NP_001008744.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same isoform (a).
- Source sequence(s)
-
AK001952, AK023514, AL137128, BC015474, BM661793, BU849335
- Consensus CDS
-
CCDS9888.1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
- Related
- ENSP00000377099.2, ENST00000393454.6
- Conserved Domains (3) summary
-
- cd09193
Location:162 → 330
- PLDc_mTdp1_1; Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase
- cd09195
Location:352 → 545
- PLDc_mTdp1_2; Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase
- pfam06087
Location:166 → 582
- Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
-
NM_001330205.2 → NP_001317134.1 tyrosyl-DNA phosphodiesterase 1 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' and 3' UTRs, and lacks an alternate exon in the 3' coding region resulting in a frameshift and a novel 3' coding region, compared to variant 1. The encoded isoform (b) is shorter, and has a distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AL137128, BM661793
- Consensus CDS
-
CCDS81836.1
- UniProtKB/TrEMBL
- E7EPD8, G3V2F4
- Conserved Domains (3) summary
-
- cd09193
Location:162 → 330
- PLDc_mTdp1_1; Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase
- cd09195
Location:352 → 545
- PLDc_mTdp1_2; Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase
- pfam06087
Location:166 → 550
- Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
-
NM_018319.4 → NP_060789.2 tyrosyl-DNA phosphodiesterase 1 isoform a
See identical proteins and their annotated locations for NP_060789.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (a). Variants 1 and 2 encode the same isoform.
- Source sequence(s)
-
AK023514, AL137128, BC015474, BM661793, BU849335
- Consensus CDS
-
CCDS9888.1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
- Related
- ENSP00000337353.4, ENST00000335725.9
- Conserved Domains (3) summary
-
- cd09193
Location:162 → 330
- PLDc_mTdp1_1; Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase
- cd09195
Location:352 → 545
- PLDc_mTdp1_2; Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase
- pfam06087
Location:166 → 582
- Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000014.9 Reference GRCh38.p14 Primary Assembly
- Range
-
89954968..90044764
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047431570.1 → XP_047287526.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
-
XM_011536942.4 → XP_011535244.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
See identical proteins and their annotated locations for XP_011535244.1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
- Conserved Domains (3) summary
-
- cd09193
Location:162 → 330
- PLDc_mTdp1_1; Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase
- cd09195
Location:352 → 545
- PLDc_mTdp1_2; Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase
- pfam06087
Location:166 → 582
- Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
-
XM_047431568.1 → XP_047287524.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
-
XM_047431576.1 → XP_047287532.1 tyrosyl-DNA phosphodiesterase 1 isoform X2
- UniProtKB/TrEMBL
- E7EPD8, G3V2F4
-
XM_047431569.1 → XP_047287525.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
-
XM_006720197.5 → XP_006720260.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
See identical proteins and their annotated locations for XP_006720260.1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
- Conserved Domains (3) summary
-
- cd09193
Location:162 → 330
- PLDc_mTdp1_1; Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase
- cd09195
Location:352 → 545
- PLDc_mTdp1_2; Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase
- pfam06087
Location:166 → 582
- Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
-
XM_047431577.1 → XP_047287533.1 tyrosyl-DNA phosphodiesterase 1 isoform X2
- UniProtKB/TrEMBL
- E7EPD8, G3V2F4
-
XM_047431573.1 → XP_047287529.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
-
XM_005267848.4 → XP_005267905.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
See identical proteins and their annotated locations for XP_005267905.1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
- Conserved Domains (3) summary
-
- cd09193
Location:162 → 330
- PLDc_mTdp1_1; Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase
- cd09195
Location:352 → 545
- PLDc_mTdp1_2; Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase
- pfam06087
Location:166 → 582
- Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
-
XM_047431572.1 → XP_047287528.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
-
XM_017021440.3 → XP_016876929.1 tyrosyl-DNA phosphodiesterase 1 isoform X2
- UniProtKB/TrEMBL
- E7EPD8, G3V2F4
- Related
- ENSP00000450628.1, ENST00000555880.5
- Conserved Domains (3) summary
-
- cd09193
Location:162 → 330
- PLDc_mTdp1_1; Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase
- cd09195
Location:352 → 545
- PLDc_mTdp1_2; Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase
- pfam06087
Location:166 → 550
- Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
-
XM_047431579.1 → XP_047287535.1 tyrosyl-DNA phosphodiesterase 1 isoform X4
-
XM_047431578.1 → XP_047287534.1 tyrosyl-DNA phosphodiesterase 1 isoform X3
-
XM_047431574.1 → XP_047287530.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
-
XM_047431575.1 → XP_047287531.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
RNA
-
XR_007064032.1 RNA Sequence
-
XR_007064034.1 RNA Sequence
-
XR_007064035.1 RNA Sequence
-
XR_007064033.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060938.1 Alternate T2T-CHM13v2.0
- Range
-
84179088..84268965
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054376362.1 → XP_054232337.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
-
XM_054376361.1 → XP_054232336.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
-
XM_054376360.1 → XP_054232335.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
-
XM_054376367.1 → XP_054232342.1 tyrosyl-DNA phosphodiesterase 1 isoform X2
- UniProtKB/TrEMBL
- E7EPD8, G3V2F4
-
XM_054376363.1 → XP_054232338.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
-
XM_054376359.1 → XP_054232334.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
-
XM_054376366.1 → XP_054232341.1 tyrosyl-DNA phosphodiesterase 1 isoform X2
- UniProtKB/TrEMBL
- E7EPD8, G3V2F4
-
XM_054376369.1 → XP_054232344.1 tyrosyl-DNA phosphodiesterase 1 isoform X4
-
XM_054376368.1 → XP_054232343.1 tyrosyl-DNA phosphodiesterase 1 isoform X3
-
XM_054376364.1 → XP_054232339.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
-
XM_054376365.1 → XP_054232340.1 tyrosyl-DNA phosphodiesterase 1 isoform X1
- UniProtKB/Swiss-Prot
- Q2HXX4, Q86TV8, Q96BK7, Q9NUW8, Q9NZM7, Q9NZM8
- UniProtKB/TrEMBL
-
B2RDI0
RNA
-
XR_008488883.1 RNA Sequence