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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001080494.3 → NP_001073963.1 tetratricopeptide repeat protein 39A isoform 2
See identical proteins and their annotated locations for NP_001073963.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AL162430, AL671986
- Consensus CDS
-
CCDS44144.1
- UniProtKB/TrEMBL
- A0A140VJY6, B7Z4W9
- Related
- ENSP00000360815.5, ENST00000371750.9
- Conserved Domains (1) summary
-
- pfam10300
Location:29 → 483
- DUF3808; Protein of unknown function (DUF3808)
-
NM_001144832.2 → NP_001138304.1 tetratricopeptide repeat protein 39A isoform 1
See identical proteins and their annotated locations for NP_001138304.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes isoform 1.
- Source sequence(s)
-
AF007170, BC028374, CX788693, DA871604
- Consensus CDS
-
CCDS44143.1
- UniProtKB/TrEMBL
-
B7Z4W9
- Related
- ENSP00000406144.2, ENST00000413473.6
- Conserved Domains (1) summary
-
- pfam10300
Location:32 → 486
- DUF3808; Protein of unknown function (DUF3808)
-
NM_001297662.2 → NP_001284591.1 tetratricopeptide repeat protein 39A isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) contains multiple differences, compared to variant 1, including initiation of translation at an alternate start codon. The encoded isoform (3) has distinct N- and C- termini and is shorter than isoform 1.
- Source sequence(s)
-
AK000220
- Consensus CDS
-
CCDS76163.1
- UniProtKB/TrEMBL
-
A0A0A0MRQ0
- Related
- ENSP00000360812.3, ENST00000371747.7
- Conserved Domains (1) summary
-
- pfam10300
Location:28 → 420
- DUF3808; Protein of unknown function (DUF3808)
-
NM_001297663.2 → NP_001284592.1 tetratricopeptide repeat protein 39A isoform 4
See identical proteins and their annotated locations for NP_001284592.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (4) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AL162430, AL671986
- Consensus CDS
-
CCDS90953.1
- UniProtKB/TrEMBL
-
B7Z4W9
- Related
- ENSP00000505859.1, ENST00000680483.1
- Conserved Domains (1) summary
-
- pfam10300
Location:28 → 482
- DUF3808; Protein of unknown function (DUF3808)
-
NM_001297664.1 → NP_001284593.1 tetratricopeptide repeat protein 39A isoform 5
See identical proteins and their annotated locations for NP_001284593.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (5) has a shorter N-terminus than isoform 1.
- Source sequence(s)
-
AF007170, AK298019, BC028374, BI761577
- Consensus CDS
-
CCDS72789.1
- UniProtKB/TrEMBL
- A0A0A0MSH8, A0A9K3Y803, A1LZS7, B7Z4W9, F6WE04
- Related
- ENSP00000262675.7, ENST00000262675.11
- Conserved Domains (1) summary
-
- pfam10300
Location:1 → 455
- DUF3808; Protein of unknown function (DUF3808)
-
NM_001297665.1 → NP_001284594.1 tetratricopeptide repeat protein 39A isoform 6
See identical proteins and their annotated locations for NP_001284594.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) contains multiple differences, compared to variant 1, including initiation of translation at an alternate start codon. The encoded isoform (6) has a distinct N-terminus and is longer than isoform 1.
- Source sequence(s)
-
AF007170, AK000220, BC028374, HY029911
- Consensus CDS
-
CCDS72790.1
- UniProtKB/Swiss-Prot
- B7Z782, E7EQY9, G3XAF8, O43417, O75040, Q5SRH5, Q5SRH6, Q5SRH7, Q5SRH8, Q5SRH9, Q5SRI0, Q5SRI1, Q5SRI2, Q5T7S1, Q6PIU8, Q9BT24
- UniProtKB/TrEMBL
-
B7Z4W9
- Related
- ENSP00000393952.2, ENST00000447632.6
- Conserved Domains (1) summary
-
- pfam10300
Location:29 → 518
- DUF3808; Protein of unknown function (DUF3808)
-
NM_001297666.1 → NP_001284595.1 tetratricopeptide repeat protein 39A isoform 7
See identical proteins and their annotated locations for NP_001284595.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) differs in the 5' UTR, lacks a large portion of the 5' coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (7) has a shorter N-terminus than isoform 1.
- Source sequence(s)
-
AF007170, BC004399, BQ227134
- Consensus CDS
-
CCDS76162.1
- UniProtKB/Swiss-Prot
-
Q5SRH9
- Related
- ENSP00000431228.1, ENST00000530004.5
- Conserved Domains (1) summary
-
- pfam10300
Location:1 → 126
- DUF3808; Protein of unknown function (DUF3808)
-
NM_001297667.1 → NP_001284596.1 tetratricopeptide repeat protein 39A isoform 8
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) differs in the 5' UTR, lacks a large portion of the 5' coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (8) has a shorter N-terminus than isoform 1.
- Source sequence(s)
-
AF007170, BQ227134
- UniProtKB/Swiss-Prot
-
Q5SRH9
- Conserved Domains (1) summary
-
- pfam10300
Location:1 → 59
- DUF3808; Protein of unknown function (DUF3808)
-
NM_001410793.1 → NP_001397722.1 tetratricopeptide repeat protein 39A isoform 9
Status: VALIDATED
- Source sequence(s)
-
AL162430, AL671986
- Consensus CDS
-
CCDS90954.1
- UniProtKB/TrEMBL
- A0A0A0MSW9, B7Z4W9
- Related
- ENSP00000405803.2, ENST00000439482.6
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
51287258..51345116 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011541048.3 → XP_011539350.1 tetratricopeptide repeat protein 39A isoform X1
- UniProtKB/TrEMBL
-
B7Z4W9
- Conserved Domains (1) summary
-
- pfam10300
Location:32 → 521
- DUF3808; Protein of unknown function (DUF3808)
-
XM_011541053.3 → XP_011539355.1 tetratricopeptide repeat protein 39A isoform X5
See identical proteins and their annotated locations for XP_011539355.1
- UniProtKB/TrEMBL
- A0A7P0T922, B7Z4W9
- Conserved Domains (1) summary
-
- pfam10300
Location:1 → 490
- DUF3808; Protein of unknown function (DUF3808)
-
XM_005270644.3 → XP_005270701.1 tetratricopeptide repeat protein 39A isoform X6
- UniProtKB/TrEMBL
-
B7Z4W9
- Conserved Domains (1) summary
-
- pfam10300
Location:25 → 479
- DUF3808; Protein of unknown function (DUF3808)
-
XM_006710471.3 → XP_006710534.1 tetratricopeptide repeat protein 39A isoform X3
- UniProtKB/TrEMBL
-
B7Z4W9
- Conserved Domains (1) summary
-
- pfam10300
Location:25 → 514
- DUF3808; Protein of unknown function (DUF3808)
-
XM_011541051.3 → XP_011539353.1 tetratricopeptide repeat protein 39A isoform X5
See identical proteins and their annotated locations for XP_011539353.1
- UniProtKB/TrEMBL
- A0A7P0T922, B7Z4W9
- Conserved Domains (1) summary
-
- pfam10300
Location:1 → 490
- DUF3808; Protein of unknown function (DUF3808)
-
XM_047449644.1 → XP_047305600.1 tetratricopeptide repeat protein 39A isoform X8
- UniProtKB/TrEMBL
- A0A0A0MSH8, A0A9K3Y803, A1LZS7, B7Z4W9, F6WE04
-
XM_047449632.1 → XP_047305588.1 tetratricopeptide repeat protein 39A isoform X5
- UniProtKB/TrEMBL
- A0A7P0T922, B7Z4W9
-
XM_047449641.1 → XP_047305597.1 tetratricopeptide repeat protein 39A isoform X7
- UniProtKB/TrEMBL
-
B7Z4W9
-
XM_047449631.1 → XP_047305587.1 tetratricopeptide repeat protein 39A isoform X4
- UniProtKB/TrEMBL
-
B7Z4W9
-
XM_011541054.3 → XP_011539356.1 tetratricopeptide repeat protein 39A isoform X8
See identical proteins and their annotated locations for XP_011539356.1
- UniProtKB/TrEMBL
- A0A0A0MSH8, A0A9K3Y803, A1LZS7, B7Z4W9, F6WE04
- Related
- ENSP00000388995.2, ENST00000422925.6
- Conserved Domains (1) summary
-
- pfam10300
Location:1 → 455
- DUF3808; Protein of unknown function (DUF3808)
-
XM_011541052.3 → XP_011539354.1 tetratricopeptide repeat protein 39A isoform X5
See identical proteins and their annotated locations for XP_011539354.1
- UniProtKB/TrEMBL
- A0A7P0T922, B7Z4W9
- Related
- ENSP00000505465.1, ENST00000680290.1
- Conserved Domains (1) summary
-
- pfam10300
Location:1 → 490
- DUF3808; Protein of unknown function (DUF3808)
-
XM_011541049.3 → XP_011539351.1 tetratricopeptide repeat protein 39A isoform X2
- UniProtKB/TrEMBL
-
B7Z4W9
- Conserved Domains (1) summary
-
- pfam10300
Location:30 → 519
- DUF3808; Protein of unknown function (DUF3808)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
51167163..51225015 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054335239.1 → XP_054191214.1 tetratricopeptide repeat protein 39A isoform X1
- UniProtKB/TrEMBL
-
B7Z4W9
-
XM_054335246.1 → XP_054191221.1 tetratricopeptide repeat protein 39A isoform X5
- UniProtKB/TrEMBL
- A0A7P0T922, B7Z4W9
-
XM_054335241.1 → XP_054191216.1 tetratricopeptide repeat protein 39A isoform X3
- UniProtKB/TrEMBL
-
B7Z4W9
-
XM_054335247.1 → XP_054191222.1 tetratricopeptide repeat protein 39A isoform X6
- UniProtKB/TrEMBL
-
B7Z4W9
-
XM_054335245.1 → XP_054191220.1 tetratricopeptide repeat protein 39A isoform X5
- UniProtKB/TrEMBL
- A0A7P0T922, B7Z4W9
-
XM_054335250.1 → XP_054191225.1 tetratricopeptide repeat protein 39A isoform X8
- UniProtKB/TrEMBL
- A0A0A0MSH8, A0A9K3Y803, A1LZS7, B7Z4W9, F6WE04
-
XM_054335243.1 → XP_054191218.1 tetratricopeptide repeat protein 39A isoform X5
- UniProtKB/TrEMBL
- A0A7P0T922, B7Z4W9
-
XM_054335248.1 → XP_054191223.1 tetratricopeptide repeat protein 39A isoform X7
- UniProtKB/TrEMBL
-
B7Z4W9
-
XM_054335242.1 → XP_054191217.1 tetratricopeptide repeat protein 39A isoform X4
- UniProtKB/TrEMBL
-
B7Z4W9
-
XM_054335244.1 → XP_054191219.1 tetratricopeptide repeat protein 39A isoform X5
- UniProtKB/TrEMBL
- A0A7P0T922, B7Z4W9
-
XM_054335249.1 → XP_054191224.1 tetratricopeptide repeat protein 39A isoform X8
- UniProtKB/TrEMBL
- A0A0A0MSH8, A0A9K3Y803, A1LZS7, B7Z4W9, F6WE04
-
XM_054335240.1 → XP_054191215.1 tetratricopeptide repeat protein 39A isoform X2
- UniProtKB/TrEMBL
-
B7Z4W9