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    ribD riboflavin-specific deaminase/reductase [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 879079, updated on 11-Sep-2024

    Summary

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    Gene symbol
    ribD
    Gene description
    riboflavin-specific deaminase/reductase
    Locus tag
    PA4056
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (4536921..4538042, complement)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene 3,4-dihydroxy-2-butanone-4-phosphate synthase Neighboring gene riboflavin synthase subunit alpha Neighboring gene transcriptional regulator NrdR Neighboring gene pseudo Neighboring gene hypothetical protein Neighboring gene thioredoxin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Kinetic and mechanistic analysis of the Escherichia coli ribD-encoded bifunctional deaminase-reductase involved in riboflavin biosynthesis. Magalhães ML, et al. Biochemistry, 2008 Jun 17. PMID 18500821
    2. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    3. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
    4. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article
    5. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Salunkhe P, et al. J Bacteriol, 2005 Jul. PMID 15995206, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Function Evidence Code Pubs
    enables deaminase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables riboflavin reductase (NADPH) activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables riboflavin synthase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    riboflavin-specific deaminase/reductase
    NP_252745.1
    • Product name confidence: class 2 (High similarity to functionally studied protein)

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      4536921..4538042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_252745.1 riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_252745.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5E5R671
      Conserved Domains (1) summary
      PRK10786
      Location:5 → 373
      ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
    Nucleotide Protein
    Heading Accession and Version

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