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    arnB UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 879143, updated on 11-Sep-2024

    Summary

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    Gene symbol
    arnB
    Gene description
    UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
    Locus tag
    PA3552
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (3979860..3981008)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene alginate o-acetyltransferase AlgF Neighboring gene bifunctional mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Neighboring gene undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase Neighboring gene bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase Neighboring gene 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Neighboring gene 4-amino-4-deoxy-L-arabinose lipid A transferase Neighboring gene 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deficient Lipid A Remodeling by the arnB Gene Promotes Biofilm Formation in Antimicrobial Peptide Susceptible Pseudomonas aeruginosa. Segev-Zarko LA, et al. Biochemistry, 2018 Apr 3. PMID 29518324
    2. Origin of lipid A species modified with 4-amino-4-deoxy-L-arabinose in polymyxin-resistant mutants of Escherichia coli. An aminotransferase (ArnB) that generates UDP-4-deoxyl-L-arabinose. Breazeale SD, et al. J Biol Chem, 2003 Jul 4. PMID 12704196
    3. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    4. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
    5. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Process Evidence Code Pubs
    acts_upstream_of_or_within beta-L-Ara4N-lipid A biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
    NP_252242.1
    • class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in (if known).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      3979860..3981008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_252242.1 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_252242.1

      Status: PROVISIONAL

      Conserved Domains (1) summary
      PRK11658
      Location:4 → 380
      PRK11658; UDP-4-amino-4-deoxy-L-arabinose aminotransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9HY65.1

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