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    T01D3.6 IgGFc-binding protein-like [ Caenorhabditis elegans ]

    Gene ID: 179863, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T01D3.6
    Official Full Name
    IgGFc-binding protein-like
    Primary source
    WormBase:WBGene00011330
    Locus tag
    CELE_T01D3.6
    See related
    AllianceGenome:WB:WBGene00011330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable calcium ion binding activity and serine-type endopeptidase inhibitor activity. Predicted to be located in extracellular region. Orthologous to human ZAN (zonadhesin). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T01D3.6 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    9
    Sequence:
    Chromosome: V; NC_003283.11 (13716824..13720414)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Zinc transporter ZIP9 Neighboring gene pseudo Neighboring gene CUB-like domain-containing protein;CUB_2 domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    IgGFc-binding protein-like
    NP_506394.1
    • Confirmed by transcript evidence
    NP_506395.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      13716824..13720414
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_073994.2 → NP_506395.1  IgGFc-binding protein-like [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506395.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EEP7
      Conserved Domains (4) summary
      smart00179
      Location:615 → 651
      EGF_CA; Calcium-binding EGF-like domain
      smart00216
      Location:179 → 351
      VWD; von Willebrand factor (vWF) type D domain
      pfam01826
      Location:489 → 546
      TIL; Trypsin Inhibitor like cysteine rich domain
      cl00085
      Location:655 → 906
      FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

    2. NM_073993.4 → NP_506394.1  IgGFc-binding protein-like [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506394.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EDT4
      Conserved Domains (4) summary
      smart00179
      Location:627 → 663
      EGF_CA; Calcium-binding EGF-like domain
      smart00216
      Location:179 → 351
      VWD; von Willebrand factor (vWF) type D domain
      pfam01826
      Location:501 → 558
      TIL; Trypsin Inhibitor like cysteine rich domain
      cl00085
      Location:667 → 918
      FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    Nucleotide Protein
    Heading Accession and Version

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