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    Y54E10A.6 B3/B4 tRNA-binding domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 171890, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y54E10A.6
    Official Full Name
    B3/B4 tRNA-binding domain-containing protein
    Primary source
    WormBase:WBGene00021828
    Locus tag
    CELE_Y54E10A.6
    See related
    AllianceGenome:WB:WBGene00021828
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA binding activity. Predicted to contribute to phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation. Orthologous to human LRRC47 (leucine rich repeat containing 47). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y54E10A.6 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (3163688..3168057)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene RNA helicase Neighboring gene ncRNA Neighboring gene Large ribosomal subunit protein bL17m Neighboring gene Dynactin subunit 6 Neighboring gene Ribosome production factor 2 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    contributes_to phenylalanine-tRNA ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables phenylalanine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in phenylalanyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    B3/B4 tRNA-binding domain-containing protein
    NP_001380012.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      3163688..3168057
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001393182.1 → NP_001380012.1  B3/B4 tRNA-binding domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N3F2
      Conserved Domains (3) summary
      PLN02265
      Location:266 → 495
      PLN02265; probable phenylalanyl-tRNA synthetase beta chain
      COG4886
      Location:45 → 219
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:47 → 69
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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