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    Y75B8A.25 RanBD1 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 176654, updated on 18-Sep-2024

    Summary

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    Official Symbol
    Y75B8A.25
    Official Full Name
    RanBD1 domain-containing protein
    Primary source
    WormBase:WBGene00013558
    Locus tag
    CELE_Y75B8A.25
    See related
    AllianceGenome:WB:WBGene00013558
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Y75B8A.25 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    7
    Sequence:
    Chromosome: III; NC_003281.10 (12274040..12282221)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Protein kinase domain-containing protein Neighboring gene 1-phosphatidylinositol 4-kinase Neighboring gene Multidrug resistance-associated protein 1 Neighboring gene ncRNA Neighboring gene Prion-like-(Q/N-rich)-domain-bearing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    RanBD1 domain-containing protein
    NP_499597.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      12274040..12282221
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067196.8 → NP_499597.2  RanBD1 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499597.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XW62
      Conserved Domains (1) summary
      pfam13634
      Location:393 → 465
      Nucleoporin_FG; Nucleoporin FG repeat region
    Nucleotide Protein
    Heading Accession and Version

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