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    spe-47 Major sperm protein [ Caenorhabditis elegans ]

    Gene ID: 189522, updated on 9-Dec-2024

    Summary

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    Official Symbol
    spe-47
    Official Full Name
    Major sperm protein
    Primary source
    WormBase:WBGene00021271
    Locus tag
    CELE_Y23H5A.4
    See related
    AllianceGenome:WB:WBGene00021271
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See spe-47 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    6
    Sequence:
    Chromosome: I; NC_003279.8 (2617529..2620430)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Alpha-catulin Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Protein pid-3 Neighboring gene Cnn_1N domain-containing protein;t-SNARE coiled-coil homology domain-containing protein Neighboring gene Cysteine--tRNA ligase, cytoplasmic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functionally non-redundant paralogs spe-47 and spe-50 encode FB-MO associated proteins and interact with him-8. Clark JN, et al. PLoS One, 2020. PMID 33382704, Free PMC Article
    2. A New Player in the Spermiogenesis Pathway of Caenorhabditis elegans. LaMunyon CW, et al. Genetics, 2015 Nov. PMID 26333688, Free PMC Article
    3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Functionally non-redundant paralogs spe-47 and spe-50 encode FB-MO associated proteins and interact with him-8.
      Title: Functionally non-redundant paralogs spe-47 and spe-50 encode FB-MO associated proteins and interact with him-8.
    2. identification of the spe-47 gene from the hc198 mutation that causes premature spermiogenesis
      Title: A New Player in the Spermiogenesis Pathway of Caenorhabditis elegans.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in pseudopodium IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Major sperm protein
    NP_001293287.1
    • Confirmed by transcript evidence
    NP_491010.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      2617529..2620430
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058609.3 → NP_491010.1  Major sperm protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O76615
      Conserved Domains (2) summary
      pfam00635
      Location:264 → 369
      Motile_Sperm; MSP (Major sperm protein) domain
      pfam03134
      Location:78 → 142
      TB2_DP1_HVA22; TB2/DP1, HVA22 family

    2. NM_001306358.3 → NP_001293287.1  Major sperm protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A061AKN6
    Nucleotide Protein
    Heading Accession and Version

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