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    B0336.7 THAP-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175792, updated on 2-Nov-2024

    Summary

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    Official Symbol
    B0336.7
    Official Full Name
    THAP-type domain-containing protein
    Primary source
    WormBase:WBGene00015147
    Locus tag
    CELE_B0336.7
    See related
    AllianceGenome:WB:WBGene00015147
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA binding activity. Is expressed in intestine and neurons. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See B0336.7 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    6
    Sequence:
    Chromosome: III; NC_003281.10 (5694729..5697366, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene SH3 domain-containing protein Neighboring gene ARF7 effector protein C-terminal domain-containing protein Neighboring gene Transcription initiation factor IIA small chain homolog Neighboring gene Ubiquitin-like protein atg-12 Neighboring gene RGS domain-containing protein;Regulator of G-protein signaling rgs-5 Neighboring gene Protein SWAP;SURP motif domain-containing protein;Suppressor of white apricot N-terminal domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prefoldin 6 mediates longevity response from heat shock factor 1 to FOXO in C. elegans. Son HG, et al. Genes Dev, 2018 Dec 1. PMID 30478249, Free PMC Article
    2. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
    3. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
    4. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    THAP-type domain-containing protein
    NP_001379553.1
    • Confirmed by transcript evidence
    NP_498227.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5694729..5697366 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065826.4 → NP_498227.1  THAP-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498227.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KY76
      Conserved Domains (1) summary
      smart00980
      Location:135 → 207
      THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion

    2. NM_001392106.1 → NP_001379553.1  THAP-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5DX39
      Conserved Domains (1) summary
      smart00980
      Location:45 → 117
      THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
    Nucleotide Protein
    Heading Accession and Version

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