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    znf-207 BED-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178042, updated on 9-Dec-2024

    Summary

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    Official Symbol
    znf-207
    Official Full Name
    BED-type domain-containing protein
    Primary source
    WormBase:WBGene00007105
    Locus tag
    CELE_B0035.1
    See related
    AllianceGenome:WB:WBGene00007105
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Is expressed in intestine; muscle cell; nervous system; pharynx; and tail. Orthologous to human ZNF207 (zinc finger protein 207). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See znf-207 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_003282.8 (11310972..11312518)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Fungal lipase-like domain-containing protein Neighboring gene ncRNA Neighboring gene DnaJ homolog dnj-2 Neighboring gene Macro domain-containing protein Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Systematic RNAi Screen Reveals a Novel Role of a Spindle Assembly Checkpoint Protein BuGZ in Synaptic Transmission in C. elegans. Han M, et al. Front Mol Neurosci, 2017. PMID 28553202, Free PMC Article
    2. A metabolic regulatory network for the Caenorhabditis elegans intestine. Bhattacharya S, et al. iScience, 2022 Aug 19. PMID 35847555, Free PMC Article
    3. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
    4. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
    5. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    BED-type domain-containing protein
    NP_502124.1
    • Confirmed by transcript evidence
    NP_502125.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      11310972..11312518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069723.6 → NP_502124.1  BED-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502124.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U3S8
      Conserved Domains (1) summary
      sd00017
      Location:13 → 32
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. NM_069724.4 → NP_502125.1  BED-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502125.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q93156
      Conserved Domains (1) summary
      sd00017
      Location:13 → 32
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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