T22C1.1 UBR-type domain-containing protein [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: T22C1.1
Official Full Name: UBR-type domain-containing protein
Primary source: WormBase:WBGene00011912
Locus tag: CELE_T22C1.1
See related: AllianceGenome:WB:WBGene00011912
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Orthologous to human UBR7 (ubiquitin protein ligase E3 component n-recognin 7). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See T22C1.1 in Genome Data Viewer

Location:: chromosome: I

Exon count:: 5

Sequence:: Chromosome: I; NC_003279.8 (7936264..7938328)

Chromosome I - NC_003279.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

STS1-234 (e-PCR)
- UniSTS:241729

STS1-235 (e-PCR)
- UniSTS:241730

STS1-236 (e-PCR)
- UniSTS:241731

T22C1.1 (e-PCR)
- UniSTS:308080

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables ubiquitin protein ligase activity	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: UBR-type domain-containing protein

NP_492187.2

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003279.8 Reference assembly

Range

7936264..7938328

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_059786.8 → NP_492187.2 UBR-type domain-containing protein [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_492187.2

Status: REVIEWED

UniProtKB/TrEMBL

Q22662

Conserved Domains (2) summary

cl19744
Location:49 → 119

zf-UBR; Putative zinc finger in N-recognin (UBR box)

cl22851
Location:138 → 201

PHD_SF; PHD finger superfamily