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    F13A1 coagulation factor XIII A chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711264, updated on 17-Aug-2024

    Summary

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    Official Symbol
    F13A1provided by VGNC
    Official Full Name
    coagulation factor XIII A chainprovided by VGNC
    Primary source
    VGNC:VGNC:72462
    Locus tag
    EGK_14442
    See related
    Ensembl:ENSMMUG00000001248
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See F13A1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (163608969..163939813)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (6202789..6362537, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114677719 Neighboring gene lymphocyte antigen 86 Neighboring gene calponin-3 pseudogene Neighboring gene pyruvate kinase PKM pseudogene Neighboring gene neuritin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-glutamine gamma-glutamyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in blood coagulation, fibrin clot formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptide cross-linking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    coagulation factor XIII A chain
    XP_001096779.2
    XP_014990996.1
    XP_014990997.1
    XP_028703688.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      163608969..163939813
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028847855.1 → XP_028703688.1  coagulation factor XIII A chain isoform X1

      UniProtKB/TrEMBL
      A0A5F8A8L3, A0A8J8YS21, F7D3L5, G7MQI1
      Conserved Domains (3) summary
      smart00460
      Location:309 → 400
      TGc; Transglutaminase/protease-like homologues
      pfam00868
      Location:46 → 164
      Transglut_N; Transglutaminase family
      pfam00927
      Location:519 → 623
      Transglut_C; Transglutaminase family, C-terminal ig like domain

    2. XM_015135510.2 → XP_014990996.1  coagulation factor XIII A chain isoform X1

      UniProtKB/TrEMBL
      A0A5F8A8L3, A0A8J8YS21, F7D3L5, G7MQI1
      Related
      ENSMMUP00000075569.1, ENSMMUT00000107706.1
      Conserved Domains (3) summary
      smart00460
      Location:309 → 400
      TGc; Transglutaminase/protease-like homologues
      pfam00868
      Location:46 → 164
      Transglut_N; Transglutaminase family
      pfam00927
      Location:519 → 623
      Transglut_C; Transglutaminase family, C-terminal ig like domain

    3. XM_001096779.4 → XP_001096779.2  coagulation factor XIII A chain isoform X1

      See identical proteins and their annotated locations for XP_001096779.2

      UniProtKB/TrEMBL
      A0A5F8A8L3, A0A8J8YS21, F7D3L5, G7MQI1
      Related
      ENSMMUP00000073298.1, ENSMMUT00000092904.1
      Conserved Domains (3) summary
      smart00460
      Location:309 → 400
      TGc; Transglutaminase/protease-like homologues
      pfam00868
      Location:46 → 164
      Transglut_N; Transglutaminase family
      pfam00927
      Location:519 → 623
      Transglut_C; Transglutaminase family, C-terminal ig like domain

    4. XM_015135511.2 → XP_014990997.1  coagulation factor XIII A chain isoform X2

      Conserved Domains (2) summary
      smart00460
      Location:173 → 264
      TGc; Transglutaminase/protease-like homologues
      pfam00927
      Location:383 → 487
      Transglut_C; Transglutaminase family, C-terminal ig like domain
    Nucleotide Protein
    Heading Accession and Version

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