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    AFF4 ALF transcription elongation factor 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709137, updated on 17-Aug-2024

    Summary

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    Official Symbol
    AFF4provided by VGNC
    Official Full Name
    ALF transcription elongation factor 4provided by VGNC
    Primary source
    VGNC:VGNC:69629
    See related
    Ensembl:ENSMMUG00000015640
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See AFF4 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (130316417..130405878, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (130569899..130659939, complement)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene ubiquinol-cytochrome c reductase complex III subunit VII Neighboring gene liver enriched antimicrobial peptide 2 Neighboring gene V-type proton ATPase subunit e 1 pseudogene Neighboring gene uncharacterized LOC106998946 Neighboring gene cytochrome c oxidase subunit NDUFA4 pseudogene Neighboring gene zinc finger CCHC-type containing 10 Neighboring gene heat shock protein family A (Hsp70) member 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of super elongation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AF4/FMR2 family member 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      130316417..130405878 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015140774.2 → XP_014996260.1  AF4/FMR2 family member 4 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QSP1, A0A1D5QZT4
      Related
      ENSMMUP00000053567.2, ENSMMUT00000058468.2
      Conserved Domains (1) summary
      pfam05110
      Location:3 → 1129
      AF-4; AF-4 proto-oncoprotein

    2. XM_015140773.2 → XP_014996259.1  AF4/FMR2 family member 4 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QSP1, F6RLV9, H9FSZ7
      Related
      ENSMMUP00000020525.3, ENSMMUT00000021944.4
      Conserved Domains (1) summary
      pfam05110
      Location:3 → 1158
      AF-4; AF-4 proto-oncoprotein

    3. XM_015140771.2 → XP_014996257.1  AF4/FMR2 family member 4 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QSP1, F6RLV9, H9FSZ7
      Conserved Domains (1) summary
      pfam05110
      Location:3 → 1158
      AF-4; AF-4 proto-oncoprotein

    RNA

    1. XR_001445532.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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