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    BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709877, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BLOC1S2provided by VGNC
    Official Full Name
    biogenesis of lysosomal organelles complex 1 subunit 2provided by VGNC
    Primary source
    VGNC:VGNC:70357
    Locus tag
    EGK_19976
    See related
    Ensembl:ENSMMUG00000061808
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See BLOC1S2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (100737992..100747761, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (95848093..95857804, complement)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene CWF19 like cell cycle control factor 1 Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein S2 pseudogene Neighboring gene uncharacterized LOC107000251 Neighboring gene polycystin 2 like 1, transient receptor potential cation channel Neighboring gene uncharacterized LOC100430823 Neighboring gene stearoyl-CoA desaturase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables gamma-tubulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lysosome localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BLOC-1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of BORC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of gamma-tubulin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    biogenesis of lysosome-related organelles complex 1 subunit 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266915.1 → NP_001253844.1  biogenesis of lysosome-related organelles complex 1 subunit 2

      See identical proteins and their annotated locations for NP_001253844.1

      Status: PROVISIONAL

      Source sequence(s)
      JV600271
      UniProtKB/TrEMBL
      A0A8J8XEG4, G7N0X2, I2CUM4
      Conserved Domains (1) summary
      pfam10046
      Location:43 → 137
      BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      100737992..100747761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028853459.1 → XP_028709292.1  biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZZK6
      Related
      ENSMMUP00000070571.1, ENSMMUT00000101116.1
      Conserved Domains (1) summary
      pfam10046
      Location:46 → 132
      BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2

    2. XM_015147797.2 → XP_015003283.1  biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X2

      UniProtKB/TrEMBL
      H9EM67
      Conserved Domains (1) summary
      pfam10046
      Location:1 → 94
      BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2

    3. XM_015147798.2 → XP_015003284.1  biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X3

      Conserved Domains (1) summary
      pfam10046
      Location:11 → 90
      BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2
    Nucleotide Protein
    Heading Accession and Version

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