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    SOX13 SRY-box transcription factor 13 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700802, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SOX13provided by VGNC
    Official Full Name
    SRY-box transcription factor 13provided by VGNC
    Primary source
    VGNC:VGNC:77839
    See related
    Ensembl:ENSMMUG00000008460
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SOX13 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (61580524..61635313)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (162501683..162556459, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene putative uncharacterized protein encoded by LINC00303 Neighboring gene uncharacterized LOC106994050 Neighboring gene uncharacterized LOC114680117 Neighboring gene uncharacterized LOC106994049 Neighboring gene ethanolamine kinase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SOX-13
    Names
    SRY (sex determining region Y)-box 13
    SRY-box 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      61580524..61635313
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001099185.3 → XP_001099185.1  transcription factor SOX-13 isoform X1

      See identical proteins and their annotated locations for XP_001099185.1

      UniProtKB/TrEMBL
      F6UUG1, I0FWM8
      Related
      ENSMMUP00000011097.2, ENSMMUT00000011831.4
      Conserved Domains (1) summary
      cd01388
      Location:422 → 493
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    2. XM_015119752.2 → XP_014975238.1  transcription factor SOX-13 isoform X2

      UniProtKB/TrEMBL
      G7MEV4
      Conserved Domains (1) summary
      cd01388
      Location:421 → 492
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

    3. XM_015119755.2 → XP_014975241.1  transcription factor SOX-13 isoform X3

      UniProtKB/TrEMBL
      H9G274
      Conserved Domains (1) summary
      cd01388
      Location:416 → 487
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    Nucleotide Protein
    Heading Accession and Version

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