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    SEMA6D semaphorin 6D [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713885, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SEMA6Dprovided by VGNC
    Official Full Name
    semaphorin 6Dprovided by VGNC
    Primary source
    VGNC:VGNC:77250
    See related
    Ensembl:ENSMMUG00000012144
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA6D in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (23594566..24184027)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (24030802..24086997)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene small ubiquitin-related modifier 2 Neighboring gene cytochrome b5 type B pseudogene Neighboring gene uncharacterized LOC106999172 Neighboring gene ribosomal protein L7-like 1-like Neighboring gene solute carrier family 24 member 5 Neighboring gene myelin expression factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-6D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      23594566..24184027
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028850891.1 → XP_028706724.1  semaphorin-6D isoform X7

      UniProtKB/TrEMBL
      H9ETN5
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    2. XM_028850881.1 → XP_028706714.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      F7GXZ9, H9ETV0, H9G018
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    3. XM_028850882.1 → XP_028706715.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      F7GXZ9, H9ETV0, H9G018
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    4. XM_028850884.1 → XP_028706717.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      F7GXZ9, H9ETV0, H9G018
      Related
      ENSMMUP00000015938.4, ENSMMUT00000017017.4
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    5. XM_015142152.2 → XP_014997638.2  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      F7GXZ9, H9ETV0, H9G018
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    6. XM_028850888.1 → XP_028706721.1  semaphorin-6D isoform X5

      UniProtKB/TrEMBL
      H9ETN5
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    7. XM_028850886.1 → XP_028706719.1  semaphorin-6D isoform X3

      UniProtKB/TrEMBL
      H9ETV0
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    8. XM_028850890.1 → XP_028706723.1  semaphorin-6D isoform X7

      UniProtKB/TrEMBL
      H9ETN5
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    9. XM_002804757.3 → XP_002804803.3  semaphorin-6D isoform X2

      UniProtKB/TrEMBL
      F7GY03, F7GY18, H9ETV0
      Related
      ENSMMUP00000015932.4, ENSMMUT00000017011.4
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      smart00423
      Location:514 → 543
      PSI; domain found in Plexins, Semaphorins and Integrins
      pfam17061
      Location:931 → 1067
      PARM

    10. XM_028850889.1 → XP_028706722.1  semaphorin-6D isoform X6

      UniProtKB/TrEMBL
      A0A5F8A7V5, H9ETN5
      Related
      ENSMMUP00000072995.1, ENSMMUT00000091290.1
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      smart00423
      Location:514 → 543
      PSI; domain found in Plexins, Semaphorins and Integrins
      pfam17061
      Location:875 → 1011
      PARM

    11. XM_028850887.1 → XP_028706720.1  semaphorin-6D isoform X4

      UniProtKB/TrEMBL
      F7GY14, H9ETV0
      Related
      ENSMMUP00000015933.4, ENSMMUT00000017012.4
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      smart00423
      Location:514 → 543
      PSI; domain found in Plexins, Semaphorins and Integrins
      pfam17061
      Location:912 → 1048
      PARM

    12. XM_028850892.1 → XP_028706725.1  semaphorin-6D isoform X8

      UniProtKB/TrEMBL
      H9ETN5, I2CTC3
      Related
      ENSMMUP00000079824.1, ENSMMUT00000087038.1
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      smart00423
      Location:514 → 543
      PSI; domain found in Plexins, Semaphorins and Integrins
      pfam17061
      Location:856 → 992
      PARM

    13. XM_028850883.1 → XP_028706716.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      F7GXZ9, H9ETV0, H9G018
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    14. XM_015142151.2 → XP_014997637.2  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      F7GXZ9, H9ETV0, H9G018
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    15. XM_001112444.4 → XP_001112444.3  semaphorin-6D isoform X7

      UniProtKB/TrEMBL
      H9ETN5
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    16. XM_001112236.4 → XP_001112236.3  semaphorin-6D isoform X2

      UniProtKB/TrEMBL
      F7GY03, F7GY18, H9ETV0
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      smart00423
      Location:514 → 543
      PSI; domain found in Plexins, Semaphorins and Integrins
      pfam17061
      Location:931 → 1067
      PARM

    17. XM_015142157.2 → XP_014997643.2  semaphorin-6D isoform X4

      UniProtKB/TrEMBL
      F7GY14, H9ETV0
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      smart00423
      Location:514 → 543
      PSI; domain found in Plexins, Semaphorins and Integrins
      pfam17061
      Location:912 → 1048
      PARM

    18. XM_001112343.4 → XP_001112343.3  semaphorin-6D isoform X6

      UniProtKB/TrEMBL
      A0A5F8A7V5, H9ETN5
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      smart00423
      Location:514 → 543
      PSI; domain found in Plexins, Semaphorins and Integrins
      pfam17061
      Location:875 → 1011
      PARM

    19. XM_001112417.4 → XP_001112417.3  semaphorin-6D isoform X8

      UniProtKB/TrEMBL
      H9ETN5, I2CTC3
      Conserved Domains (3) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      smart00423
      Location:514 → 543
      PSI; domain found in Plexins, Semaphorins and Integrins
      pfam17061
      Location:856 → 992
      PARM

    20. XM_015142153.2 → XP_014997639.2  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      F7GXZ9, H9ETV0, H9G018
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    21. XM_028850885.1 → XP_028706718.1  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      F7GXZ9, H9ETV0, H9G018
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat

    22. XM_015142154.2 → XP_014997640.2  semaphorin-6D isoform X1

      UniProtKB/TrEMBL
      F7GXZ9, H9ETV0, H9G018
      Conserved Domains (2) summary
      cd11269
      Location:49 → 513
      Sema_6D; The Sema domain, a protein interacting module, of semaphorin 6D (Sema6D)
      pfam01437
      Location:514 → 543
      PSI; Plexin repeat
    Nucleotide Protein
    Heading Accession and Version

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