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    TRIM56 tripartite motif containing 56 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713833, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TRIM56provided by VGNC
    Official Full Name
    tripartite motif containing 56provided by VGNC
    Primary source
    VGNC:VGNC:79173
    Locus tag
    EGK_13552
    See related
    Ensembl:ENSMMUG00000017366
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM56 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (43215711..43221036)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (126530671..126535969)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene mucin-17-like Neighboring gene mucin-17-like Neighboring gene uncharacterized LOC114676877 Neighboring gene serpin family E member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM56

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      43215711..43221036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015134514.2 → XP_014990000.1  E3 ubiquitin-protein ligase TRIM56

      UniProtKB/TrEMBL
      A0A663D8I2, A0A8J8YF63, F7H8Z0, G7MNW5, H9Z0A7
      Conserved Domains (6) summary
      cd00021
      Location:169 → 205
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd05819
      Location:552 → 588
      NHL; NHL repeat [structural motif]
      pfam07111
      Location:193 → 336
      HCR; Alpha helical coiled-coil rod protein (HCR)
      sd00039
      Location:560 → 589
      7WD40; WD40 repeat [structural motif]
      cl18310
      Location:551 → 748
      NHL; NHL repeat unit of beta-propeller proteins
      cd16584
      Location:19 → 60
      RING-HC_TRIM56_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 56 (TRIM56) and similar proteins

    2. XM_001107405.4 → XP_001107405.2  E3 ubiquitin-protein ligase TRIM56

      UniProtKB/TrEMBL
      A0A663D8I2, A0A8J8YF63, F7H8Z0, G7MNW5, H9Z0A7
      Related
      ENSMMUP00000022856.3, ENSMMUT00000024420.4
      Conserved Domains (6) summary
      cd00021
      Location:169 → 205
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd05819
      Location:552 → 588
      NHL; NHL repeat [structural motif]
      pfam07111
      Location:193 → 336
      HCR; Alpha helical coiled-coil rod protein (HCR)
      sd00039
      Location:560 → 589
      7WD40; WD40 repeat [structural motif]
      cl18310
      Location:551 → 748
      NHL; NHL repeat unit of beta-propeller proteins
      cd16584
      Location:19 → 60
      RING-HC_TRIM56_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 56 (TRIM56) and similar proteins

    3. XM_028845614.1 → XP_028701447.1  E3 ubiquitin-protein ligase TRIM56

      UniProtKB/TrEMBL
      A0A663D8I2, A0A8J8YF63, F7H8Z0, G7MNW5, H9Z0A7
      Conserved Domains (6) summary
      cd00021
      Location:169 → 205
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd05819
      Location:552 → 588
      NHL; NHL repeat [structural motif]
      pfam07111
      Location:193 → 336
      HCR; Alpha helical coiled-coil rod protein (HCR)
      sd00039
      Location:560 → 589
      7WD40; WD40 repeat [structural motif]
      cl18310
      Location:551 → 748
      NHL; NHL repeat unit of beta-propeller proteins
      cd16584
      Location:19 → 60
      RING-HC_TRIM56_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 56 (TRIM56) and similar proteins

    4. XM_028845613.1 → XP_028701446.1  E3 ubiquitin-protein ligase TRIM56

      UniProtKB/TrEMBL
      A0A663D8I2, A0A8J8YF63, F7H8Z0, G7MNW5, H9Z0A7
      Conserved Domains (6) summary
      cd00021
      Location:169 → 205
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd05819
      Location:552 → 588
      NHL; NHL repeat [structural motif]
      pfam07111
      Location:193 → 336
      HCR; Alpha helical coiled-coil rod protein (HCR)
      sd00039
      Location:560 → 589
      7WD40; WD40 repeat [structural motif]
      cl18310
      Location:551 → 748
      NHL; NHL repeat unit of beta-propeller proteins
      cd16584
      Location:19 → 60
      RING-HC_TRIM56_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 56 (TRIM56) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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