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    PRPH peripherin [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709827, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PRPHprovided by VGNC
    Official Full Name
    peripherinprovided by VGNC
    Primary source
    VGNC:VGNC:100093
    See related
    Ensembl:ENSMMUG00000031976
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PRPH in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (48900720..48904314)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (47578953..47584457)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene tubulin alpha-1C chain Neighboring gene uncharacterized LOC114670842 Neighboring gene trophinin associated protein Neighboring gene complement C1q like 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in type III intermediate filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peripherin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      48900720..48904314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028829448.1 → XP_028685281.1  peripherin

      UniProtKB/TrEMBL
      F7GW66, G7N6W4
      Related
      ENSMMUP00000069903.1, ENSMMUT00000083273.1
      Conserved Domains (2) summary
      pfam00038
      Location:96 → 406
      Filament; Intermediate filament protein
      pfam04732
      Location:13 → 95
      Filament_head; Intermediate filament head (DNA binding) region
    Nucleotide Protein
    Heading Accession and Version

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