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    RMND5B required for meiotic nuclear division 5 homolog B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701840, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RMND5Bprovided by VGNC
    Official Full Name
    required for meiotic nuclear division 5 homolog Bprovided by VGNC
    Primary source
    VGNC:VGNC:76836
    Locus tag
    EGK_17207
    See related
    Ensembl:ENSMMUG00000018758
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RMND5B in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (175455195..175474173)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (176611515..176630126)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene putative uncharacterized protein encoded by LINC00596 Neighboring gene NEDD4 binding protein 3 Neighboring gene NHP2 ribonucleoprotein Neighboring gene NAD(P)H-hydrate epimerase pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of GID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein transferase RMND5B
    Names
    protein RMD5 homolog B
    NP_001248522.1
    XP_014997024.2
    XP_014997026.2
    XP_014997027.2
    XP_014997028.2
    XP_014997029.2
    XP_014997030.2
    XP_014997031.2
    XP_014997032.2
    XP_014997033.2
    XP_014997035.2
    XP_014997037.2
    XP_028704995.1
    XP_028704997.1
    XP_028704998.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261593.1 → NP_001248522.1  E3 ubiquitin-protein transferase RMND5B

      See identical proteins and their annotated locations for NP_001248522.1

      Status: PROVISIONAL

      Source sequence(s)
      JV043445
      UniProtKB/TrEMBL
      A0A5F7ZBG2, H9ER50
      Conserved Domains (5) summary
      smart00667
      Location:116 → 148
      LisH; Lissencephaly type-1-like homology motif
      smart00668
      Location:156 → 212
      CTLH; C-terminal to LisH motif
      smart00757
      Location:210 → 304
      CRA; CT11-RanBPM
      pfam10607
      Location:155 → 299
      CLTH; CTLH/CRA C-terminal to LisH motif domain
      pfam13445
      Location:338 → 377
      zf-RING_UBOX; RING-type zinc-finger

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      175455195..175474173
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015141544.2 → XP_014997030.2  E3 ubiquitin-protein transferase RMND5B isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZBG2, F6XV90, F6XVA1
      Conserved Domains (2) summary
      COG5109
      Location:60 → 393
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:155 → 299
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    2. XM_015141546.2 → XP_014997032.2  E3 ubiquitin-protein transferase RMND5B isoform X3

      Conserved Domains (2) summary
      COG5109
      Location:2 → 333
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:95 → 239
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    3. XM_015141543.2 → XP_014997029.2  E3 ubiquitin-protein transferase RMND5B isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZBG2, F6XV90, F6XVA1
      Conserved Domains (2) summary
      COG5109
      Location:60 → 393
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:155 → 299
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    4. XM_028849165.1 → XP_028704998.1  E3 ubiquitin-protein transferase RMND5B isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZBG2, F6XV90, F6XVA1
      Conserved Domains (2) summary
      COG5109
      Location:60 → 393
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:155 → 299
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    5. XM_015141545.2 → XP_014997031.2  E3 ubiquitin-protein transferase RMND5B isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZBG2, F6XV90, F6XVA1
      Conserved Domains (2) summary
      COG5109
      Location:60 → 393
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:155 → 299
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    6. XM_015141541.2 → XP_014997027.2  E3 ubiquitin-protein transferase RMND5B isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZBG2
      Conserved Domains (2) summary
      COG5109
      Location:114 → 434
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:196 → 340
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    7. XM_015141540.2 → XP_014997026.2  E3 ubiquitin-protein transferase RMND5B isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZBG2
      Conserved Domains (2) summary
      COG5109
      Location:114 → 434
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:196 → 340
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    8. XM_015141542.2 → XP_014997028.2  E3 ubiquitin-protein transferase RMND5B isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZBG2
      Conserved Domains (2) summary
      COG5109
      Location:114 → 434
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:196 → 340
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    9. XM_028849164.1 → XP_028704997.1  E3 ubiquitin-protein transferase RMND5B isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZBG2, F6XV90, F6XVA1
      Related
      ENSMMUP00000024688.4, ENSMMUT00000026373.4
      Conserved Domains (2) summary
      COG5109
      Location:60 → 393
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:155 → 299
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    10. XM_015141549.2 → XP_014997035.2  E3 ubiquitin-protein transferase RMND5B isoform X3

      Conserved Domains (2) summary
      COG5109
      Location:2 → 333
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:95 → 239
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    11. XM_015141551.2 → XP_014997037.2  E3 ubiquitin-protein transferase RMND5B isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZBG2
      Conserved Domains (2) summary
      COG5109
      Location:114 → 434
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:196 → 340
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    12. XM_015141538.2 → XP_014997024.2  E3 ubiquitin-protein transferase RMND5B isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZBG2
      Conserved Domains (2) summary
      COG5109
      Location:114 → 434
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:196 → 340
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    13. XM_028849162.1 → XP_028704995.1  E3 ubiquitin-protein transferase RMND5B isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZBG2, F6XV90, F6XVA1
      Related
      ENSMMUP00000033629.3, ENSMMUT00000040578.3
      Conserved Domains (2) summary
      COG5109
      Location:60 → 393
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:155 → 299
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    14. XM_015141547.2 → XP_014997033.2  E3 ubiquitin-protein transferase RMND5B isoform X3

      Conserved Domains (2) summary
      COG5109
      Location:2 → 333
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam10607
      Location:95 → 239
      CLTH; CTLH/CRA C-terminal to LisH motif domain
    Nucleotide Protein
    Heading Accession and Version

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