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    ATF1 activating transcription factor 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 693644, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATF1provided by VGNC
    Official Full Name
    activating transcription factor 1provided by VGNC
    Primary source
    VGNC:VGNC:108325
    Locus tag
    EGK_03643
    See related
    Ensembl:ENSMMUG00000054294
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ATF1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (50392222..50462910)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (49078449..49144429)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene disco interacting protein 2 homolog B Neighboring gene U6 spliceosomal RNA Neighboring gene formin-like protein 16 Neighboring gene small nucleolar RNA SNORD22 Neighboring gene transmembrane serine protease 12 Neighboring gene thiol methyltransferase 1A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ATF4-CREB1 transcription factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclic AMP-dependent transcription factor ATF-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261536.1 → NP_001248465.1  cyclic AMP-dependent transcription factor ATF-1

      See identical proteins and their annotated locations for NP_001248465.1

      Status: PROVISIONAL

      Source sequence(s)
      JV047136
      UniProtKB/TrEMBL
      A0A5F7ZPX2, A0A8J8XY03, F7HB38
      Related
      ENSMMUP00000066683.1, ENSMMUT00000108606.1
      Conserved Domains (2) summary
      cd14690
      Location:214 → 268
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:48 → 82
      pKID; pKID domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      50392222..50462910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028828797.1 → XP_028684630.1  cyclic AMP-dependent transcription factor ATF-1 isoform X4

      Conserved Domains (1) summary
      cd14690
      Location:121 → 175
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain

    2. XM_028828796.1 → XP_028684629.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

      Conserved Domains (1) summary
      pfam02173
      Location:66 → 100
      pKID; pKID domain

    3. XM_015151601.2 → XP_015007087.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZPX2, A0A8J8XY03, F7HB38
      Conserved Domains (2) summary
      cd14690
      Location:214 → 268
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:48 → 82
      pKID; pKID domain

    4. XM_015151600.2 → XP_015007086.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZPX2, A0A8J8XY03, F7HB38
      Conserved Domains (2) summary
      cd14690
      Location:214 → 268
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:48 → 82
      pKID; pKID domain

    5. XM_015151602.2 → XP_015007088.1  cyclic AMP-dependent transcription factor ATF-1 isoform X4

      Conserved Domains (1) summary
      cd14690
      Location:121 → 175
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain

    6. XM_028828795.1 → XP_028684628.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZPX2, A0A8J8XY03, F7HB38
      Conserved Domains (2) summary
      cd14690
      Location:214 → 268
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:48 → 82
      pKID; pKID domain

    7. XM_015151599.2 → XP_015007085.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

      Conserved Domains (2) summary
      cd14690
      Location:217 → 271
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:51 → 85
      pKID; pKID domain
    Nucleotide Protein
    Heading Accession and Version

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