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    ETV6 ETS variant transcription factor 6 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 695734, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ETV6provided by VGNC
    Official Full Name
    ETS variant transcription factor 6provided by VGNC
    Primary source
    VGNC:VGNC:72444
    Locus tag
    EGK_03391
    See related
    Ensembl:ENSMMUG00000014370
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ETV6 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (13039096..13287275)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (12282911..12533921)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC107000769 Neighboring gene uncharacterized LOC107000770 Neighboring gene uncharacterized LOC114670790

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor ETV6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266080.1 → NP_001253009.1  transcription factor ETV6

      See identical proteins and their annotated locations for NP_001253009.1

      Status: PROVISIONAL

      Source sequence(s)
      JV635669
      UniProtKB/TrEMBL
      A0A663D5F3, A0A8J8XX95, F7CM21, G7N675
      Related
      ENSMMUP00000018875.3, ENSMMUT00000020165.4
      Conserved Domains (2) summary
      cd08535
      Location:56 → 123
      SAM_PNT-Tel_Yan; Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein
      smart00413
      Location:338 → 424
      ETS; erythroblast transformation specific domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      13039096..13287275
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015151078.2 → XP_015006564.1  transcription factor ETV6 isoform X1

      Conserved Domains (2) summary
      cd08535
      Location:55 → 122
      SAM_PNT-Tel_Yan; Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein
      smart00413
      Location:337 → 423
      ETS; erythroblast transformation specific domain

    2. XM_028828809.1 → XP_028684642.1  transcription factor ETV6 isoform X2

      Conserved Domains (2) summary
      cd08535
      Location:14 → 81
      SAM_PNT-Tel_Yan; Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein
      smart00413
      Location:296 → 382
      ETS; erythroblast transformation specific domain
    Nucleotide Protein
    Heading Accession and Version

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