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    PROM1 prominin 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714610, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PROM1provided by VGNC
    Official Full Name
    prominin 1provided by VGNC
    Primary source
    VGNC:VGNC:76425
    See related
    Ensembl:ENSMMUG00000008164
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PROM1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (14968132..15124022, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (15288637..15444390, complement)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor binding protein 1 Neighboring gene fibroblast growth factor binding protein 2 Neighboring gene U6 spliceosomal RNA Neighboring gene transmembrane anterior posterior transformation 1 Neighboring gene basic proline-rich protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation, molecular cloning and in vitro expression of rhesus monkey (Macaca mulatta) prominin-1.s1 complementary DNA encoding a potential hematopoietic stem cell antigen. Husain SM, et al. Tissue Antigens, 2006 Oct. PMID 17026467
    2. Nomenclature of prominin-1 (CD133) splice variants - an update. Fargeas CA, et al. Tissue Antigens, 2007 Jun. PMID 17498271
    3. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. First published report of isolation of potential hematopoietic stem cell marker prominin-1 cDNA from rhesus monkey.
      Title: Isolation, molecular cloning and in vitro expression of rhesus monkey (Macaca mulatta) prominin-1.s1 complementary DNA encoding a potential hematopoietic stem cell antigen.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cholesterol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microvillus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in prominosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prominin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077420.1 → NP_001070888.1  prominin-1 precursor

      See identical proteins and their annotated locations for NP_001070888.1

      Status: PROVISIONAL

      Source sequence(s)
      AY903606
      UniProtKB/TrEMBL
      G7MSM0, Q05EC9
      Related
      ENSMMUP00000035408.3, ENSMMUT00000042406.3
      Conserved Domains (1) summary
      pfam05478
      Location:18 → 820
      Prominin; Prominin

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      14968132..15124022 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015138021.2 → XP_014993507.1  prominin-1 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AJ98, F7DVV0
      Related
      ENSMMUP00000077096.1, ENSMMUT00000089829.1
      Conserved Domains (1) summary
      pfam05478
      Location:18 → 811
      Prominin; Prominin

    2. XM_028848134.1 → XP_028703967.1  prominin-1 isoform X3

      UniProtKB/TrEMBL
      F7DVU4, G7MSM0
      Conserved Domains (1) summary
      pfam05478
      Location:18 → 820
      Prominin

    3. XM_015138022.2 → XP_014993508.1  prominin-1 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AJ98, F7DVV0
      Related
      ENSMMUP00000035407.3, ENSMMUT00000042405.3
      Conserved Domains (1) summary
      pfam05478
      Location:18 → 811
      Prominin; Prominin

    4. XM_015138019.2 → XP_014993505.1  prominin-1 isoform X1

      UniProtKB/TrEMBL
      G7MSM0
      Conserved Domains (1) summary
      pfam05478
      Location:18 → 820
      Prominin

    5. XM_015138018.2 → XP_014993504.1  prominin-1 isoform X1

      UniProtKB/TrEMBL
      G7MSM0
      Conserved Domains (1) summary
      pfam05478
      Location:18 → 820
      Prominin

    6. XM_015138028.2 → XP_014993514.1  prominin-1 isoform X7

      UniProtKB/TrEMBL
      A0A5F8AJ98, A0A5F8AP11
      Related
      ENSMMUP00000078813.1, ENSMMUT00000082553.1
      Conserved Domains (1) summary
      pfam05478
      Location:18 → 811
      Prominin

    7. XM_015138027.2 → XP_014993513.1  prominin-1 isoform X6

      UniProtKB/TrEMBL
      A0A5F8A3C4, A0A5F8AJ98
      Related
      ENSMMUP00000071861.1, ENSMMUT00000090572.1
      Conserved Domains (1) summary
      pfam05478
      Location:18 → 811
      Prominin; Prominin

    8. XM_015138020.2 → XP_014993506.1  prominin-1 isoform X1

      UniProtKB/TrEMBL
      G7MSM0
      Conserved Domains (1) summary
      pfam05478
      Location:18 → 820
      Prominin

    9. XM_028848133.1 → XP_028703966.1  prominin-1 isoform X1

      UniProtKB/TrEMBL
      G7MSM0
      Conserved Domains (1) summary
      pfam05478
      Location:18 → 820
      Prominin

    10. XM_028848136.1 → XP_028703969.1  prominin-1 isoform X5

      UniProtKB/TrEMBL
      G7MSM0
      Conserved Domains (1) summary
      pfam05478
      Location:18 → 820
      Prominin

    11. XM_028848135.1 → XP_028703968.1  prominin-1 isoform X4

      UniProtKB/TrEMBL
      G7MSM0
      Conserved Domains (1) summary
      pfam05478
      Location:18 → 820
      Prominin
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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