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    RNF40 ring finger protein 40 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713148, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RNF40provided by VGNC
    Official Full Name
    ring finger protein 40provided by VGNC
    Primary source
    VGNC:VGNC:76745
    Locus tag
    EGK_12698
    See related
    Ensembl:ENSMMUG00000020881
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RNF40 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (28173452..28186740)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (28571801..28585101)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene phosphorylase kinase catalytic subunit gamma 2 Neighboring gene cilia and flagella associated protein 119 Neighboring gene zinc finger protein 629 Neighboring gene uncharacterized LOC114674354 Neighboring gene UPF0687 protein C20orf27-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HULC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase BRE1B
    NP_001181143.1
    XP_014981448.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194214.3 → NP_001181143.1  E3 ubiquitin-protein ligase BRE1B

      See identical proteins and their annotated locations for NP_001181143.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000290
      UniProtKB/TrEMBL
      A0A8J8YLD1, F7HL62, G7NQX2, I0FWT1
      Related
      ENSMMUP00000027479.2, ENSMMUT00000029367.4
      Conserved Domains (3) summary
      cd00162
      Location:947 → 990
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      TIGR02168
      Location:228 → 920
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam08647
      Location:754 → 848
      BRE1; BRE1 E3 ubiquitin ligase

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      28173452..28186740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015125962.2 → XP_014981448.1  E3 ubiquitin-protein ligase BRE1B isoform X1

      UniProtKB/TrEMBL
      A0A8J8YLD1, F7HL62, G7NQX2, I0FWT1
      Related
      ENSMMUP00000027480.3, ENSMMUT00000029369.4
      Conserved Domains (3) summary
      cd00162
      Location:947 → 990
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      TIGR02168
      Location:228 → 920
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam08647
      Location:754 → 848
      BRE1; BRE1 E3 ubiquitin ligase
    Nucleotide Protein
    Heading Accession and Version

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