U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SCAF4 SR-related CTD associated factor 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701931, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SCAF4provided by VGNC
    Official Full Name
    SR-related CTD associated factor 4provided by VGNC
    Primary source
    VGNC:VGNC:77054
    See related
    Ensembl:ENSMMUG00000001712
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    SFRS15
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SCAF4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (14775908..14837597)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (14926591..14988190)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene translationally-controlled tumor protein pseudogene Neighboring gene uncharacterized LOC114676703 Neighboring gene small nucleolar RNA SNORA81 Neighboring gene superoxide dismutase 1 Neighboring gene F-box/WD repeat-containing protein 11-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II C-terminal domain phosphoserine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    splicing factor, arginine/serine-rich 15

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      14775908..14837597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015133035.2 → XP_014988521.2  splicing factor, arginine/serine-rich 15 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QVR0
      Conserved Domains (5) summary
      PRK03427
      Location:337 → 417
      PRK03427; cell division protein ZipA; Provisional
      PRK07994
      Location:133 → 281
      PRK07994; DNA polymerase III subunits gamma and tau; Validated
      cd12461
      Location:502 → 582
      RRM_SCAF4; RNA recognition motif found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins
      pfam08648
      Location:996 → 1113
      DUF1777; Protein of unknown function (DUF1777)
      cd17005
      Location:5 → 135
      CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15

    2. XM_015133037.2 → XP_014988523.2  splicing factor, arginine/serine-rich 15 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QVR0, F7FZG5
      Related
      ENSMMUP00000002284.4, ENSMMUT00000002416.4
      Conserved Domains (5) summary
      PRK03427
      Location:337 → 417
      PRK03427; cell division protein ZipA; Provisional
      PRK07994
      Location:133 → 281
      PRK07994; DNA polymerase III subunits gamma and tau; Validated
      cd12461
      Location:502 → 582
      RRM_SCAF4; RNA recognition motif found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins
      pfam08648
      Location:974 → 1091
      DUF1777; Protein of unknown function (DUF1777)
      cd17005
      Location:5 → 135
      CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15

    3. XM_015133036.2 → XP_014988522.2  splicing factor, arginine/serine-rich 15 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QVR0, A0A5F8ARN6
      Related
      ENSMMUP00000080615.1, ENSMMUT00000090964.1
      Conserved Domains (5) summary
      PRK03427
      Location:337 → 417
      PRK03427; cell division protein ZipA; Provisional
      PRK07994
      Location:133 → 281
      PRK07994; DNA polymerase III subunits gamma and tau; Validated
      cd12461
      Location:498 → 578
      RRM_SCAF4; RNA recognition motif found in SR-related and CTD-associated factor 4 (SCAF4) and similar proteins
      pfam08648
      Location:992 → 1109
      DUF1777; Protein of unknown function (DUF1777)
      cd17005
      Location:5 → 135
      CID_SFRS15_SCAF4; CID (CTD-Interacting Domain) of Splicing factor arginine serine rich 15
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.