U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TTC28 tetratricopeptide repeat domain 28 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 717025, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TTC28provided by VGNC
    Official Full Name
    tetratricopeptide repeat domain 28provided by VGNC
    Primary source
    VGNC:VGNC:79785
    See related
    Ensembl:ENSMMUG00000001058
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TTC28 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (22867501..23587419)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (69764737..70532679, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 117 Neighboring gene HscB mitochondrial iron-sulfur cluster cochaperone Neighboring gene checkpoint kinase 2 Neighboring gene uncharacterized LOC114670379 Neighboring gene phosphatidylinositol transfer protein beta Neighboring gene MN1 proto-oncogene, transcriptional regulator

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tetratricopeptide repeat protein 28
    XP_015005463.1
    XP_028683732.1
    XP_028683733.1
    XP_028683734.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      22867501..23587419
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028827899.1 → XP_028683732.1  tetratricopeptide repeat protein 28 isoform X1

      UniProtKB/TrEMBL
      G7N3I0
      Conserved Domains (5) summary
      TIGR02917
      Location:47 → 969
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:91 → 121
      TPR; TPR repeat [structural motif]
      pfam05109
      Location:2120 → 2368
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam12770
      Location:1422 → 1745
      CHAT; CHAT domain
      pfam13424
      Location:989 → 1061
      TPR_12; Tetratricopeptide repeat

    2. XM_028827900.1 → XP_028683733.1  tetratricopeptide repeat protein 28 isoform X2

      UniProtKB/TrEMBL
      G7N3I0
      Conserved Domains (5) summary
      TIGR02917
      Location:47 → 969
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:91 → 121
      TPR; TPR repeat [structural motif]
      pfam05109
      Location:2112 → 2360
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam12770
      Location:1422 → 1745
      CHAT; CHAT domain
      pfam13424
      Location:989 → 1061
      TPR_12; Tetratricopeptide repeat

    3. XM_015149977.2 → XP_015005463.1  tetratricopeptide repeat protein 28 isoform X3

      UniProtKB/TrEMBL
      F6QN66, G7N3I0
      Related
      ENSMMUP00000001417.2, ENSMMUT00000001506.4
      Conserved Domains (8) summary
      smart00028
      Location:394 → 426
      TPR; Tetratricopeptide repeats
      COG0457
      Location:694 → 995
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:91 → 121
      TPR; TPR repeat [structural motif]
      pfam11914
      Location:2197 → 2285
      DUF3432; Domain of unknown function (DUF3432)
      pfam12770
      Location:1390 → 1713
      CHAT; CHAT domain
      pfam13176
      Location:959 → 994
      TPR_7; Tetratricopeptide repeat
      pfam13414
      Location:94 → 157
      TPR_11; TPR repeat
      pfam13424
      Location:315 → 386
      TPR_12; Tetratricopeptide repeat

    4. XM_028827901.1 → XP_028683734.1  tetratricopeptide repeat protein 28 isoform X4

      UniProtKB/TrEMBL
      G7N3I0
      Related
      ENSMMUP00000071787.1, ENSMMUT00000086200.1
      Conserved Domains (5) summary
      COG0457
      Location:608 → 909
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:508 → 536
      TPR; TPR repeat [structural motif]
      pfam05109
      Location:2002 → 2250
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam12770
      Location:1304 → 1627
      CHAT; CHAT domain
      pfam13424
      Location:271 → 340
      TPR_12; Tetratricopeptide repeat
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.