U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SCN1B sodium voltage-gated channel beta subunit 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707134, updated on 20-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SCN1Bprovided by VGNC
    Official Full Name
    sodium voltage-gated channel beta subunit 1provided by VGNC
    Primary source
    VGNC:VGNC:76983
    See related
    Ensembl:ENSMMUG00000004843
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SCN1B in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (34450401..34460675)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (30941918..30951862)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene GRAM domain containing 1A Neighboring gene uncharacterized LOC106994725 Neighboring gene uncharacterized LOC114674222 Neighboring gene hepsin Neighboring gene uncharacterized LOC106994727 Neighboring gene FXYD domain containing ion transport regulator 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sodium channel regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cardiac muscle cell action potential involved in contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of heart rate by cardiac conduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of voltage-gated sodium channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    sodium channel regulatory subunit beta-1; sodium channel subunit beta-1
    Names
    sodium channel, voltage-gated, type I, beta subunit

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001258167.1 → NP_001245096.1  sodium channel regulatory subunit beta-1 precursor

      See identical proteins and their annotated locations for NP_001245096.1

      Status: PROVISIONAL

      Source sequence(s)
      JU473653
      UniProtKB/TrEMBL
      A0A1D5QJ95, A0A1D5QTD0, F6QID2, G7NM36
      Related
      ENSMMUP00000078679.1, ENSMMUT00000108122.1
      Conserved Domains (2) summary
      pfam07686
      Location:23 → 147
      V-set; Immunoglobulin V-set domain
      cd00096
      Location:26 → 32
      Ig; Ig strand A' [structural motif]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      34450401..34460675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028838435.1 → XP_028694268.1  sodium channel subunit beta-1 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZEV3
      Related
      ENSMMUP00000063163.1, ENSMMUT00000086148.1
      Conserved Domains (1) summary
      pfam07686
      Location:23 → 147
      V-set; Immunoglobulin V-set domain

    2. XM_028838437.1 → XP_028694270.1  sodium channel subunit beta-1 isoform X3

      Conserved Domains (1) summary
      pfam07686
      Location:23 → 147
      V-set; Immunoglobulin V-set domain

    3. XM_028838436.1 → XP_028694269.1  sodium channel subunit beta-1 isoform X2

      Conserved Domains (1) summary
      pfam07686
      Location:8 → 114
      V-set; Immunoglobulin V-set domain

    4. XM_015123520.2 → XP_014979006.1  sodium channel subunit beta-1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5R912, G7NM36
      Related
      ENSMMUP00000056803.2, ENSMMUT00000062314.2
      Conserved Domains (2) summary
      pfam07686
      Location:8 → 114
      V-set; Immunoglobulin V-set domain
      cd00096
      Location:21 → 28
      Ig; Ig strand C [structural motif]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.