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    COL2A1 collagen type II alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704851, updated on 17-Aug-2024

    Summary

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    Official Symbol
    COL2A1provided by VGNC
    Official Full Name
    collagen type II alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:71295
    See related
    Ensembl:ENSMMUG00000011444
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See COL2A1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    55
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (47529567..47561002, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (46194587..46225959, complement)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene vitamin D receptor Neighboring gene uncharacterized LOC107000846 Neighboring gene uncharacterized LOC114670835 Neighboring gene transmembrane protein 106C Neighboring gene uncharacterized LOC114671055 Neighboring gene 60S ribosomal protein L37 pseudogene Neighboring gene SUMO specific peptidase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of collagen type II trimer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-1(II) chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      47529567..47561002 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001100739.4 → XP_001100739.2  collagen alpha-1(II) chain isoform X2

      UniProtKB/TrEMBL
      F7B3R3
      Related
      ENSMMUP00000015024.4, ENSMMUT00000016031.4
      Conserved Domains (3) summary
      pfam01391
      Location:801 → 860
      Collagen; Collagen triple helix repeat (20 copies)
      pfam00093
      Location:34 → 89
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:1254 → 1486
      COLFI; Fibrillar collagen C-terminal domain

    2. XM_028829431.1 → XP_028685264.1  collagen alpha-1(II) chain isoform X1

      Conserved Domains (4) summary
      pfam01391
      Location:802 → 861
      Collagen; Collagen triple helix repeat (20 copies)
      PRK07764
      Location:853 → 1060
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam00093
      Location:34 → 89
      VWC; von Willebrand factor type C domain
      pfam01410
      Location:1255 → 1487
      COLFI; Fibrillar collagen C-terminal domain

    3. XM_028829432.1 → XP_028685265.1  collagen alpha-1(II) chain isoform X3

      Conserved Domains (3) summary
      pfam01391
      Location:619 → 678
      Collagen; Collagen triple helix repeat (20 copies)
      PRK07764
      Location:670 → 877
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam01410
      Location:1072 → 1304
      COLFI; Fibrillar collagen C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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