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    C9orf72 C9orf72-SMCR8 complex subunit [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706828, updated on 17-Aug-2024

    Summary

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    Official Symbol
    C9orf72provided by VGNC
    Official Full Name
    C9orf72-SMCR8 complex subunitprovided by VGNC
    Primary source
    VGNC:VGNC:70419
    See related
    Ensembl:ENSMMUG00000016508
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    C15H9orf72
    Orthologs
    human mouse all
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    Genomic context

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    See C9orf72 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (56181632..56209219)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (56300146..56328531)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672775 Neighboring gene melanoma inhibitory activity protein 2-like Neighboring gene uncharacterized LOC114672643 Neighboring gene MOB kinase activator 3B Neighboring gene interferon kappa

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in autophagosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    guanine nucleotide exchange factor C9orf72 homolog; guanine nucleotide exchange C9orf72 homolog
    Names
    chromosome 15 C9orf72 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257526.1 → NP_001244455.1  guanine nucleotide exchange factor C9orf72 homolog

      See identical proteins and their annotated locations for NP_001244455.1

      Status: PROVISIONAL

      Source sequence(s)
      JU333327
      UniProtKB/TrEMBL
      F7G0U4
      Related
      ENSMMUP00000074518.1, ENSMMUT00000080773.1
      Conserved Domains (1) summary
      pfam15019
      Location:61 → 324
      C9orf72-like; C9orf72-like protein family

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      56181632..56209219
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015117390.2 → XP_014972876.1  guanine nucleotide exchange C9orf72 homolog isoform X1

      UniProtKB/TrEMBL
      F7G0U4
      Related
      ENSMMUP00000021694.2, ENSMMUT00000023188.4
      Conserved Domains (1) summary
      pfam15019
      Location:61 → 324
      C9orf72-like; C9orf72-like protein family

    2. XM_015117391.2 → XP_014972877.1  guanine nucleotide exchange C9orf72 homolog isoform X2

      Conserved Domains (1) summary
      pfam15019
      Location:61 → 324
      C9orf72-like; C9orf72-like protein family

    3. XM_028834301.1 → XP_028690134.1  guanine nucleotide exchange C9orf72 homolog isoform X3

      UniProtKB/TrEMBL
      F7G0U9
      Conserved Domains (1) summary
      pfam15019
      Location:61 → 222
      C9orf72-like; C9orf72-like protein family

    4. XM_028834299.1 → XP_028690132.1  guanine nucleotide exchange C9orf72 homolog isoform X1

      UniProtKB/TrEMBL
      F7G0U4
      Conserved Domains (1) summary
      pfam15019
      Location:61 → 324
      C9orf72-like; C9orf72-like protein family
    Nucleotide Protein
    Heading Accession and Version

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